[HTML][HTML] Perineuronal nets stabilize the grid cell network

…, KK Lensjø, ME Lepperød, SA Dragly… - Nature …, 2021 - nature.com
Grid cells are part of a widespread network which supports navigation and spatial memory.
Stable grid patterns appear late in development, in concert with extracellular matrix …

Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai

AP Buccino, ME Lepperød, SA Dragly… - Journal of neural …, 2018 - iopscience.iop.org
Objective. A major goal in systems neuroscience is to determine the causal relationship
between neural activity and behavior. To this end, methods that combine monitoring neural …

[HTML][HTML] Experimental directory structure (Exdir): an alternative to HDF5 without introducing a new file format

SA Dragly, M Hobbi Mobarhan… - Frontiers in …, 2018 - frontiersin.org
Natural sciences generate an increasing amount of data in a wide range of formats developed
by different research groups and commercial companies. At the same time there is a …

Neuronify: an educational simulator for neural circuits

SA Dragly, MH Mobarhan, AV Solbrå, S Tennøe… - Eneuro, 2017 - eneuro.org
Educational software (apps) can improve science education by providing an interactive way
of learning about complicated topics that are hard to explain with text and static illustrations. …

[HTML][HTML] Experimental pipeline (expipe): A lightweight data management platform to simplify the steps from experiment to data analysis

ME Lepperød, SA Dragly, AP Buccino… - Frontiers in …, 2020 - frontiersin.org
As experimental neuroscience is moving toward more integrative approaches, with a variety
of acquisition techniques covering multiple spatiotemporal scales, data management is …

Bridging quantum mechanics and molecular dynamics with artificial neural networks

SA Dragly - 2014 - duo.uio.no
In this thesis, we explore how a classical potential can be constructed by fitting an artificial
neural network to the potential energy surface of an ab initio calculation. A Hartree-Fock …

[PDF][PDF] Perineuronal nets stabilize the grid cell network

SA Dragly, H Sutterud, JS Blackstad, M Fyhn, T Hafting - scholar.archive.org
Results Degradation of PNNs in MEC. The dense expression of PNNs in MEC of adult rats
shows an almost complete overlap with expression of PV and mainly enwraps PV+ cell soma …

Increased productivity with real time atomistic simulations using Atomify

A Hafreager, SA Dragly… - APS March Meeting …, 2018 - ui.adsabs.harvard.edu
The typical workflow when running atomistic simulations includes working with several
programs. A text editor is needed to create and modify input scripts, the terminal to run the …

Computational Tools for Integrative Neuroscience

SA Dragly - Series of dissertations submitted to the Faculty of …, 2019 - duo.uio.no
To understand how the brain learns and performs complex tasks, such as spatial navigation,
it needs to be studied on a wide range of spatial and temporal scales. Data gathered in …

Ab Initio Studies of Molecules

HM Eiding - 2014 - duo.uio.no
The goal of this thesis has been to develop from scratch an ab initio computer program for
calculating the electronic structure and properties of molecules. In order to obtain a good …