User profiles for Hongkui Zeng

Hongkui Zeng

Executive Vice President and Director, Allen Institute for Brain Science
Verified email at alleninstitute.org
Cited by 40486

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

…, SM Sunkin, M Hawrylycz, C Koch, H Zeng - Nature …, 2016 - nature.com
Nervous systems are composed of various cell types, but the extent of cell type diversity is
poorly understood. We constructed a cellular taxonomy of one cortical region, primary visual …

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

…, MJ Hawrylycz, AR Jones, ES Lein, H Zeng - Nature …, 2010 - nature.com
The Cre/lox system is widely used in mice to achieve cell-type-specific gene expression.
However, a strong and universally responding system to express genes under Cre control is still …

A mesoscale connectome of the mouse brain

…, C Koch, A Bernard, C Dang, AR Jones, H Zeng - Nature, 2014 - nature.com
Comprehensive knowledge of the brain’s wiring diagram is fundamental for understanding
how the nervous system processes information at both local and global scales. However, with …

Neuronal cell-type classification: challenges, opportunities and the path forward

H Zeng, JR Sanes - Nature Reviews Neuroscience, 2017 - nature.com
Neurons have diverse molecular, morphological, connectional and functional properties. We
believe that the only realistic way to manage this complexity — and thereby pave the way …

[PDF][PDF] The Allen mouse brain common coordinate framework: a 3D reference atlas

…, A Bernard, JW Phillips, M Hawrylycz, C Koch, H Zeng… - Cell, 2020 - cell.com
Recent large-scale collaborations are generating major surveys of cell types and connections
in the mouse brain, collecting large amounts of data across modalities, spatial scales, and …

[HTML][HTML] Shared and distinct transcriptomic cell types across neocortical areas

…, M Hawrylycz, K Svoboda, AR Jones, C Koch, H Zeng - Nature, 2018 - nature.com
The neocortex contains a multitude of cell types that are segregated into layers and functionally
distinct areas. To investigate the diversity of cell types across the mouse neocortex, here …

Conserved cell types with divergent features in human versus mouse cortex

…, A Bernard, M Hawrylycz, JW Phillips, B Tasic, H Zeng… - Nature, 2019 - nature.com
Elucidating the cellular architecture of the human cerebral cortex is central to understanding
our cognitive abilities and susceptibility to disease. Here we used single-nucleus RNA-…

Hierarchical organization of cortical and thalamic connectivity

…, A Williford, JW Phillips, AR Jones, C Koch, H Zeng - Nature, 2019 - nature.com
The mammalian cortex is a laminar structure containing many areas and cell types that are
densely interconnected in complex ways, and for which generalizable principles of …

[HTML][HTML] Comparative cellular analysis of motor cortex in human, marmoset and mouse

…, B Tasic, EZ Macosko, SA McCarroll, JT Ting, H Zeng… - Nature, 2021 - nature.com
The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally
conserved across mammals 1 . Here, using high-throughput transcriptomic and epigenomic …

[PDF][PDF] What is a cell type and how to define it?

H Zeng - Cell, 2022 - cell.com
Cell types are the basic functional units of an organism. Cell types exhibit diverse
phenotypic properties at multiple levels, making them challenging to define, categorize, and …