The Drosophila Embryonic Neuropile Can Be Divided into Four Dorso-Ventral Layers, Which Are Likely to Have Distinct Functions in Information Processing

Previous studies have shown that the axons of sensory neurons project to distinct medio-lateral, dorso-ventral, and antero-posterior domains in the neuropile in correlation with their modality and dendritic morphology [7]–[9].

We have extended these studies using Fasciclin II (Fas II) positive tracts as reference points (Figure 1A) [6],[10]. We divide the neuropile into three medio-lateral domains and four dorso-ventral layers (Figure 1C). With the exception of the chordotonal (ch) neurons, sensory axons terminate in the medial domain of the neuropile. Ch axons terminate and branch in the intermediate domain. There is very little sensory input to the dorsal-most layer (layer 1) where motor neurons establish their dendritic arbors. The proprioceptive dorsal bipolar dendritic (dbd) and class I md (multidendritic) neurons terminate in the upper central layer (layer 2) [6],[9],[11]. The ch neurons terminate in the lower central layer (layer 3) [6], whereas nociceptive class IV md neurons terminate in the ventral-most layer (layer 4). Class IV md neurons can be identified with ppkEGFP, which labels one intersegmental nerve (ISN) and two segmental nerve (SN) neurons in each hemisegment [9],[12].

The position of termination in the neuropile does not correlate with the nerve route by which the sensory neurons reach the neuropile (see Figure S1). Sensory axons whose cell bodies are located ventrally in the body wall travel in the SN, whereas axons whose cell bodies are located dorsally or laterally in the body wall travel in the ISN [13]. Sensory axons running in the SN and ISN terminate in layers 2, 3, or 4, in correlation with their modality and dendritic morphology [9],[11]. Since each of the three modality-specific sensory termination domains contains some neurons that have travelled through the SN, and others that have travelled through the ISN, differences in axon routing to the neuropile cannot account for differences in termination within the neuropile.

Expressing plex B or plex A in Sensory Neurons Shifts Their Terminals away from Central and Dorsal Layers of the Ventral Nerve Cord

To investigate mechanisms that confine sensory projections of different modalities to different dorso-ventral layers of the neuropile, we carried out a gain-of-function screen for trans-membrane proteins, which, when expressed selectively in sensory neurons, shift sensory terminals with respect to Fas II tracts.

We used PO163GAL4, UAS-n-synaptobrevin-GFP flies to target gene expression selectively to sensory neurons and simultaneously to visualise their terminals (Figure 2A) [14]. As a test of our method, we confirmed that expressing the Robo 3 receptor for Slit in sensory neurons shifts their terminals away from the medial domain of neuropile (Figure 2B) [6].

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Figure 2. Effects of altering levels of receptors for Slit, Sema 2a, or Sema 1a in sensory neurons and the distribution of cues in neuropile.

(A–E) Representative images of sensory terminals labelled with PO163GAL4, UAS-n-syb-GFP (green) with respect to Fas II tracts (red) in 21-h embryos (left) and diagrams showing patterns of sensory terminals superimposed on wild-type pattern (right). In all cases images show projections of a confocal z series of transverse sections through A7. Dorsal is up. Arrowheads show midline. White lines, layer boundaries. Numbers indicate layers. M, medial; I, intermediate; L, lateral domains. *, p<0.05; **, p<0.01; ***, p<0.001. Scale bar: 10 µm. (A) Wild-type pattern of sensory terminals revealed in A7 in the CNS of PO163GAL4, UAS-n-syb-GFP embryos. (B) Expressing Robo3 in sensory neurons excludes sensory terminals from the medial domain of neuropile. Sensory terminals shift laterally with respect to Fas II tracts. Quantification of the normalised surface area occupied by sensory terminals (sensory area [SA]) in the medial domain (SA_M/T = SA[medial]/SA[medial+intermediate+lateral]) reveals a significant decrease (***, p = 9×10⁻²⁵; Student's t-test; average SA_M/T = 0.04; SD = 0.04; n = 30 hemisegments) with respect to wild-type embryos (average SA_M/T = 0.3; SD = 0.07; n = 30 hemisegments). (C) Expressing Plex B in sensory neurons results in exclusion of sensory neuron terminals from neuropile layer 2. Quantification of SA in layer 2 (SA_2/h = SA(layer 2)/[hemisegment surface area]) reveals a significant decrease (***, p = 4×10⁻¹⁷; Student's t-test; average SA_2/h = 0.003; SD = 0.006; n = 32 hemisegments) with respect to wild-type embryos (average SA_2/h = 0.06; SD = 0.02; n = 32 hemisegments). (D) Expressing Plex A in sensory neurons results in their exclusion from layer 1 and from intermediate portions of layer 3. Sensory terminals appear compressed into the most medial portion of layers 4, 2, and 3, so that the overall effect is a ventral/medial projection pattern in the form of an arc on both sides of the midline. Quantification of SA_1+3+4/h (SA_1+3+4/h = SA[layer 1+3+4]/[hemisegment surface area]) reveals a significant decrease (***, p = 2×10⁻²²; Student's t-test; average SA_1+3+4/h = 0.1; SD = 0.04; n = 38 hemisegments) with respect to wild-type embryos (average SA_1+3+4/h = 0.3; SD = 0.05; n = 32 hemisegments). (E) Co-expressing Robo3 and Plex B in sensory neurons produces a “combination” of Robo 3 and Plex B expression phenotypes. Sensory terminals are now mostly confined to the lateral-most portion of layers 3 and 4. Quantification of SA in the medial domain reveals a significant decrease (***, p = 1×10⁻¹⁴; Student's t-test; average SA_M/T = 0.03; SD = 0.05; n = 14 hemisegments) with respect to wild-type embryos (average SA_M/T = 0.3; SD = 0.07; n = 30 hemisegments). Quantification of SA in layer 2 reveals a significant decrease (***, p = 6×10⁻¹⁵; Student's t-test; average SA_2/h = 0.004; SD = 0.009; n = 32 hemisegments) with respect to wild-type embryos (average SA_2/h = 0.06; SD = 0.02; n = 32 hemisegments). (F–I) Immunofluorescence visualisation of Slit, Sema 2a, and Sema 1a (F, G, and J) and mapping of Sema 2a and Sema 1a (white) with respect to Fas II tracts (red) (H and I) in 13-h-old embryos. Images show projections of confocal z series of transverse sections through A7. Dorsal is up. Arrowheads show midline. White lines, layer boundaries. Magenta lines, neuropile outlines. Numbers indicate layers: M, medial; I, intermediate; L, lateral domains. Scale bar: 5 µm. (F) Superposition of Slit (blue), Sema 2a (red), and Sema 1a (green) patterns. (G) Slit is expressed at highest levels at the midline in all dorso-ventral layers of the neuropile. It forms a medial to lateral concentration gradient. (H and I) Mapping of Sema 2a and Sema 1a expression with respect to Fas II tracts. Note that pattern of forming Fas II tracts in 13-h embryos is variable and slightly different from that in 21-h embryos. However, prominent tracts are still readily recognisable reference points. (H) Sema 2a is expressed at high levels in a medio-lateral stripe perpendicular to the midline extending across the central region of neuropile in layer 2 between I2 and I3. It forms central to dorsal and central to ventral concentration gradients. Expression of the Plex B receptor for Sema 2a (see C) shifts sensory terminals away from high Sema 2a levels. (I) Sema1a expression is strongest in layer 1 and in the intermediate portions of layer 3. Sema 1a is very weakly if at all expressed in layer 4 and in the most medial parts of the neuropile. Expression of the Plex A receptor for Sema 1a (see D) results in the exclusion of sensory terminals from regions with high Sema 1a levels. (J) Superposition of Slit and Sema 2a (both white) patterns. Co-expression of Robo 3 and Plex B (see E) shifts sensory terminals from high Slit and Sema 2a levels. (K) Quantification of the Slit gradient from lateral (L) to medial (M) in a hemisegment (n = 12 hemisegments). Note the medial to lateral gradient. (L) Quantification of the Sema 2a gradient from the ventral (V) to dorsal (D) neuropile (n = 9). Note the central to ventral and the central to dorsal gradients.

https://doi.org/10.1371/journal.pbio.1000135.g002

We screened 418 lines with UAS inserts in front of trans-membrane protein coding genes (see Materials and Methods and Table S1 for detailed results of the screen) by systematically expressing them in sensory neurons and analysing the pattern of sensory terminals in abdominal segments (A1–A7) at 21-h after egg laying (AEL).

We identified 11 genes (2.6%) that change the pattern of sensory terminals, without altering the number of neurons or preventing sensory axons from reaching the central nervous system (CNS) (Table S1). Of the 11 genes expressed, two produced obvious shifts along the dorso-ventral axis. Both belong to the same family: plex B and A. If plex B is expressed in all sensory neurons, sensory terminals are excluded from layer 2 (Figure 2C). If plex A is expressed, terminals are excluded from the intermediate regions of layer 3 and from layer 1 (Figure 2D). We also co-expressed Robo3 and Plex B in sensory neurons and found that this produces a “combination” of Robo 3 and Plex B expression phenotypes. In these embryos sensory terminals are now mostly confined to the lateral-most portion of layers 3 and 4 (Figure 2E).

Sema 2a and Sema 1a Are Expressed in Central and Dorsal Layers of the Ventral Nerve Cord

The Plexins are receptors for the Semaphorins (Semas), a diverse family of secreted and membrane-associated proteins [15]–[19]. In Drosophila there are two Plexins (A and B) and five Semas: 1a, 1b, and 5c (transmembrane) and 2a and 2b (secreted). Plex B binds Sema 2a and mediates the Sema 2a-dependent repulsion of motor and sensory axons in the periphery and the fasciculation of longitudinal tracts in the ventral nerve cord (VNC) [20],[21]. Plex A binds strongly to Sema 1a and Sema 1b and mediates the Sema-dependent repulsion of embryonic motor axons in the periphery and the repulsion of adult olfactory receptor axons by Sema 1a in the antennal lobes [22]–[24].

The Plexin overexpression phenotypes suggested that their Sema ligands might act as cues to position the terminals of neurons along the dorso-ventral axis of the forming neuropile. We therefore used antibody labelling to analyse the expression of Semas 2a and 1a in the CNS at different stages of embryogenesis: prior to sensory axon ingrowth (11-h AEL), at stages when sensory axons form their terminal arbors (13-h AEL), and several hours after sensory axons have completed their terminal arbors (21-h AEL).

Sema 2a expression first becomes detectable at 11 h as the outgrowth of sensory axons begins, persists strongly until 16 h, but has disappeared by 21 h, when the embryo is mature and ready to hatch. At 13 h, when sensory axons are forming their terminal arbors, the highest levels of Sema 2a are in layer 2 in the centre of the neuropile (Figure 2F and 2H). Strikingly, the protein forms gradients of expression in the neuropile that extend dorsally and ventrally from layer 2 (Figure 2L), at right angles to the mediolateral gradient of Slit (Figure 2F, 2G, 2J, and 2K). There is no detectable expression in layer 4. Our experiments show that the effect of overexpressing Plex B in sensory neurons is to shift their terminals away from regions with high Sema 2a levels. This effect is still detectable at 21 h when there is no Sema 2a expression and we conclude that misplaced terminals do not compensate by delayed growth into central neuropile (Figure 2C).

Sema 1a expression is present at 10-h AEL, before sensory axons have entered the neuropile and persists throughout embryogenesis (unpublished data). By 13 h the highest levels of Sema 1a are in the lateral and intermediate portions of layers 1 and 3, at lower levels in layer 2, and not detectable in layer 4 (Figure 2F and 2I). In addition to differences in the levels of Sema 1a expression in different dorso-ventral layers of the neuropile, we also find an apparent decrease in concentration from intermediate (high) to medial (low) in layers 1 and 3. At 21 h Sema 1a is still strong in intermediate portions of layers 1 and 3. The effect of overexpressing Plex A is to exclude sensory terminals from these high levels of Sema 1a expression (Figure 2D).

We also analyzed the distributions of Sema 1a and Sema 2a in the antero-posterior axis, at the time of sensory axon ingrowth into the CNS, and found they appear uniform (Figure S2A and S2B).

To confirm that Sema 2a and Sema 1a act as the ligands for Plex B and Plex A in our experiments, we tested the sema 2a and sema 1a dependence of the Plex B and Plex A overexpression phenotypes in sensory neurons.

We analysed patterns of sensory terminals in sema 2a⁰³⁰²¹ loss of function embryos [25] and in embryos in which plex B was overexpressed in sensory neurons in a sema 2a⁰³⁰²¹ background. In sema 2a⁰³⁰²¹ embryos we find ectopic sensory terminals in layer 2 (Figure 3A). Overexpression of Plex B in sensory neurons in a sema 2a⁰³⁰²¹ background fails to exclude sensory terminals from central and dorsal neuropile (compare Figures 2C and 3B). The pattern of sensory terminals in these embryos is similar to their pattern in sema 2a⁰³⁰²¹ mutants (compare Figure 3A and 3B). We conclude that Sema 2a is the functional ligand for Plex B in this system.

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Figure 3. sema 2a and sema 1a mutations suppress the phenotypes of Plex B and Plex A overexpression in sensory neurons.

(A–D) Representative images of sensory terminals labelled with PO163GAL4, UAS-n-syb-GFP (green) with respect to Fas II tracts (red) in 21-h embryos (left) and diagrams showing patterns of sensory terminals in different genotypes superimposed (right). In all cases images show projections of a confocal z series of transverse sections through A7. Dorsal is up. Arrowheads show midline. White lines, layer boundaries. Numbers indicate layers: M, medial; I, intermediate; L, lateral domains. Scale bar: 10 µm. (A) In sema 2a⁰³⁰²¹ mutant embryos, sensory terminals aberrantly invade neuropile layer 2 and to a lesser extent layer 1. Right: Diagram showing the pattern of sensory terminals in sema 2a⁰³⁰²¹ mutant (green) and (yellow) embryos, superimposed. Quantification of SA in layer 2 in sema 2a⁰³⁰²¹ mutant embryos reveals a significant increase (***, p = 5×10⁻⁵; Student's t-test; average SA_2/h = 0.1; SD = 0.05; n = 24 hemisegments) with respect to wild type (average SA_2/h = 0.06; SD = 0.02; n = 32 hemisegments). (B) Expressing Plex B in sensory neurons in a sema 2a⁰³⁰²¹ mutant background fails to exclude sensory terminals from neuropile layer 2. Right: Diagram showing the patterns of Plex B expressing sensory terminals in sema 2a⁰³⁰²¹ (green) mutant and wild-type (yellow) backgrounds, superimposed. Quantification of SA in layer 2 reveals a significant increase (***, p = 10×10⁻¹²; Student's t-test; average SA_2/h = 0.06 and SD = 0.03, n = 31 hemisegments), with respect to Plex B expression in wild-type background (average SA_2/h = 0.003; SD = 0.006, n = 24 hemisegments). (C) In sema 1a^P1 mutant embryos, sensory terminals aberrantly invade neuropile layer 1 and to a lesser extent layers 2 and 3. This results in an large increase in the surface area occupied by sensory neuron terminals in layers 1 and 3. Right: Diagram showing the patterns of sensory terminals in sema 1a^P1 mutant (green) and (yellow) embryos, superimposed. Quantification of SA_1+3+4/h reveals a significant increase (***, p = 5×10⁻¹⁵; Student's t-test) in sema 1a^P1 mutants (average SA_1+3+4/h = 0.6 and SD = 0.09, n = 23 hemisegments), compared to wild type (average SA_1+3+4/h = 0.3; SD = 0.05, n = 32 hemisegments). (D) Expressing Plex A in sensory neurons in a sema 1a^P1 background fails to exclude sensory terminals from neuropile layers 1 and 3. Right: Diagram showing the patterns of sensory terminals that express Plex A in sema 1a^P1 mutant (green) and wild-type (yellow) backgrounds, superimposed. Quantification of SA_1+3+4/h reveals a significant increase (***, p = 2×10⁻²⁵; Student's t-test) in sema 1a^P1 mutant (average SA_1+3+4/h = 0.5 and SD = 0.09, n = 30 hemisegments), compared to wild-type (average SA_1+3+4/h = 0.1; SD = 0.04; n = 38) backgrounds.

https://doi.org/10.1371/journal.pbio.1000135.g003

We recombined the UAS-plex A-HA [24] transgene with the sema 1a^P1 [26] mutation to express Plex A in a sema 1a mutant background. We analysed patterns of sensory terminals in sema 1a^P1 mutant embryos and in embryos in which Plex A was overexpressed in sensory neurons in a sema 1a^P1 background. In sema 1a^P1 embryos, we found ectopic sensory terminals in layers 1 and 3 (Figure 3C). Overexpression of Plex A in sensory neurons in a sema 1a^P1 background failed to exclude them from layers 1 and 3 (compare Figures 2D and 3D). The pattern of sensory terminals in these embryos is strikingly similar to their pattern in sema 1a^P1 mutants (compare Figure 3C and 3D). We conclude that Sema 1a is the functional ligand for Plex A in this system.

We were able to identify potential cellular sources of the transmembrane Semaphorin Sema 1a by looking for neuronal populations that project to layers 1 and 3 (Figure S3). One such population are the motorneurons, most of which project dendrites to layer 1 (Figures 1 and S3A). Using the OK371-GAL4 we targeted the expression of the cell death gene reaper and of the CD8GFP reporter (OK371-GAL4, UASCD8GFP;UAS-reaper) to the motor neurons [27]. This resulted in the death of most motor neurons by the early first instar larval stage (as judged both by the onset of larval paralysis and by the loss of GFP signal) (Figure S3C). Immunofluorescence visualisation of Sema 1a shows a significant reduction in Sema 1a levels in layer 1 in animals that lack motor neurons, compared to animals with intact motor neurons (Figure S3B, S3D, and S3E). We conclude that the motorneuron dendrites are likely to be a source of Sema 1a in the dorsal neuropile. Another cell population that projects to layer 1, as well as to layer 3, are the GABAergic interneurons (Figure S3F). We used GADGAL4 [28],[29] to visualise and kill both the motor neurons and the GABAergic interneurons and found that this resulted in nearly complete loss of Sema 1a staining from both layers 1 and 3 (Figure S3G, n = 10 embryos). We conclude that the GABAergic interneurons are likely to be a significant source of Sema 1a in layer 1 and also in layer 3.

We have so far been unable to identify cellular populations that project exclusively to layer 2, but since the expression is continuous across the midline (see Figure S2A), at least some midline cells could be involved. One possibility is that the recently described extensions of midline glial cells, the gliopodia [30], might provide a vehicle by which high levels of Sema 2a are deployed across the developing neuropile. Interestingly these extensions of the glial cells have a limited life span, becoming much reduced late in embryogenesis and we find that Sema 2a expression also declines in these late stages. The VNC of embryos that lack midline glial cells (for example in single minded mutants; [31]) are too fragile and disorganized to allow analysis of levels of Sema 2a along the dorso-ventral axis. Instead we restored Sema 2a expression in the midline glial cells using the single mindedGAL4 line [31], in an otherwise sema 2a mutant background (sema 2a, UAS-sema 2a;single-mindedGAL4) (see Figure S4A–S4C for details of these experiments). We were able to restore Sema 2a expression in the neuropile (Figure S4B), in layers 1, 2, and 3 (Figure S4C), but in a pattern that appeared broader than the endogenous stripe in layer 2. Thus a source of the Sema 2a gradients could potentially be a subset of the midline cells, although we cannot exclude the possibility that some other cells are the endogenous source of this cue in the CNS.

Ventrally Projecting Sensory Neurons Terminate in Regions of Low Sema 1a and Low Sema 2a Expression Levels

To investigate the role of the Sema/Plexin system in determining the position at which axons terminate within the layered structure of the neuropile we decided to focus our experiments on a single class of sensory cells with well defined terminal branches, the nociceptive class IV md neurons. Class IV md neurons can be identified with ppkEGFP [9],[12], which labels one ISN and two SN neurons in each hemisegment. The axons of these cells terminate medially in the ventral-most part of the neuropile, layer 4 (Figure 1C), where they branch asymmetrically in the antero-posterior axis (Figure S7A).

By examining the location of these ppkEGFP-expressing axons with respect to Sema expression we confirmed that at 13-h AEL these axons terminate in a region of low Sema 2a (Figure 4A) and just below regions of high Sema 1a expression levels (Figure 4B). At 21-h AEL the class IV terminals remain in a region with low Sema 1a expression (Figure 4C).

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Figure 4. Class IV md neurons terminate in a neuropile region with low levels of Sema 1a and Sema 2a.

Immunofluorescence visualisation of Sema 2a (A) and Sema 1a (B and C)) (green) with respect to ppk-EGFP (red), in the CNS at 13 (A and B) or 21 (C)-h AEL. Images show projections of a confocal z series of transverse sections through A7. (A) Class IV axon terminals are in a region of low Sema 2a levels. (B and C) Class IV axons, grow to ventral-most neuropile, where Sema 1a levels are lowest. Class IV terminals are just beneath regions of higher Sema1a expression levels in layer 3 at both 13 (B) and 21 (C)-h AEL. Note that neither Sema 1a nor Sema 2a is expressed at high levels in most lateral regions of neuropile, thus providing a potential corridor for axons to grow from their entry points to more ventral neuropile regions. Dorsal up. Arrowheads show midline. Magenta lines, neuropile outlines. Scale bar: 5 µm.

https://doi.org/10.1371/journal.pbio.1000135.g004

sema 1a and sema 2a Are Required to Exclude Ventrally Projecting Class IV md Neurons from Dorsal and Central Neuropile

We now asked whether sema 1a and sema 2a are required to confine class IV projections to layer 4. In embryos mutant for sema 1a^P1 [26], sema 2a⁰³⁰²¹ [25], and in sema 1a^P1, sema 2a⁰³⁰²¹ double mutants, the class IV axons have aberrant patterns of termination and/or growth in the dorso-ventral axis (compare Figure 5A with 5B, 5C and 5D; see also Figure S6 for details of the effects of these mutations on the dorso-ventral position of Fas II tracts). We make a distinction between growth and termination phenotypes of class IV axons (For details of this distinction and examples of different kinds of growth and termination phenotypes see Figure S5).

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Figure 5. sema 1a and sema 2a are required to exclude Class IV axons from dorsal and central neuropile.

(A–D) Projections of class IV axons labelled with ppkEGFP (green) and Fas II tracts (red) in sema 1a^P1/+ (A), sema 1a^P1 (B), sema 2a⁰³⁰²¹ (C), and sema 1a^P1, sema 2a⁰³⁰²¹ double mutant (D) 21-h embryos. Images show projections of confocal z series of transverse sections through an abdominal segment. (A) Projections of Class IV axons in sema 1a^P1/+; ppkEGFP embryos. (B) In sema 1a^P1; ppkEGFP embryos class IV axons project aberrantly and terminate in dorsal and central regions of neuropile (arrows). Fas II tracts are also severely affected. (C) In sema 2a⁰³⁰²¹; ppkEGFP embryos class IV axons project aberrantly to dorsal and central neuropile (arrows). The position of Fas II tracts is also affected. (D) Class IV projections have a significantly stronger phenotype in sema 2a⁰³⁰²¹, sema 1a^P1; ppkEGFP embryos than in single mutants and often terminate in dorsal neuropile. Two class IV axons in the left hemisegment have initially entered the CNS centrally and then turned and terminated in dorsal neuropile (arrow). The disruption of Fas II labelled tracts is also stronger in double mutants. Dorsal up. Arrowheads show midline. Scale bar: 8 µm. (E–H) Quantification of aberrant termination phenotypes. For our statistical analysis of class IV termination phenotypes we counted as “aberrant” only those hemisegments with terminals in layers 1, 2, or 3 (Figure S5A and S5B). We did not count as “aberrant” those axons that grow aberrantly through layers 1, 2, or 3, without terminating there (aberrant growth with normal termination) (see Figure S5C). (E) Chart shows average percentage of hemisegments with aberrant terminals (Hat) in layers 1, 2, and 3 per embryo (per 14 hemisegments) [Hat(1+2+3) = (n hemisegments with terminals in 1, 2, and 3/14)×100] in sema 1a^P1/+ (s1/+), sema 1a^P1 (s1), sema 2a⁰²⁰²¹ (s2), and sema 1a^P1, sema 2a⁰³⁰²¹ double mutant (s1, s2) 21-h embryos. Hat(1+2+3) is significantly higher in sema 1a^P1 (purple ***, p = 1×10⁻⁵; Student's t-test; average Hat(1+2+3) = 13%; n = 21 embryos, 294 hemisegments), sema 2a⁰³⁰²¹ (purple ***, p = 6×10⁻⁵; Student's t-test; average Hat(1+2+3) = 5%; n = 24 embryos, 336 hemisegments) and sema 1a^P1, sema 2a⁰³⁰²¹ double mutant (purple ***, p = 7×10⁻⁴; Student's t-test; average Hat(1+2+3) = 31.3%; n = 10 embryos, 140 hemisegments) than in sema 1a^P1/+ controls (average Hat(1+2+3) = 0%; n = 30 embryos, 420 hemisegments). Hat(1+2+3) is also significantly higher in sema 1a^P1, sema 2a⁰³⁰²¹ double mutants, than in either sema 1a^P1 (red **, p = 0.01) or sema 2a⁰³⁰²¹ (red **, p = 0.002) single mutants. (F–H) Pie charts (left) show proportion of hemisegments with class IV axon terminals in layers 1, 2, 3, and 4 in the different mutant backgrounds (out of the total number of hemisegments analysed and pooled from different embryos). Bar charts (right) show the average (per embryo) relative proportion of hemisegments with aberrant terminal in each layer, in the different mutant backgrounds. Blue, Hat(1)/Hat(1+2+3); red, Hat(2)/Hat(1+2+3); yellow, Hat(3)/Hat(1+2+3). (F) In sema 1a mutants 87% of axons terminate in layer 4, and 13% terminate aberrantly (n = 294). 7% of axons terminate in layer 1, 2% in layer 2, and 4% in layer 3. Right: In sema 1a mutants there is a significantly higher proportion of aberrant hemisegments with terminals in layer 1 than in layer 2 (black ***, p = 4×10⁻⁵). Comparison with sema 2a mutants reveals a significantly higher proportion of aberrant hemisegments with terminals in layer 1 (blue line and blue ***, p = 5×10⁻⁴). (G) In sema 2a mutants 95% of axons terminate in layer 4, and 5% terminate aberrantly (n = 336). 3% of axons terminate in layer 2 and 2% in layer 3. Right: In sema 2a mutants there is a significantly higher proportion of aberrant hemisegments with terminals in layer 2 than in layer 1 (black *, p = 0.027). A comparison with sema 1a mutants reveals a significantly higher proportion of aberrant hemisegments with terminals in layer 2 than in sema 1a mutants (red line and red **, p = 0.005). (H) In sema 1a, sema 2a double mutants 69% of axons terminate in their wild-type layer 4, and 31% terminate aberrantly (n = 140). 11% of axons terminate in layer 1, 11% in layer 2, and 9% in layer 3.

https://doi.org/10.1371/journal.pbio.1000135.g005

We found a significant increase in the percentage of hemisegments with aberrant terminals in sema 1a^P1, sema 2a⁰³⁰²¹, and sema 1a^P1, sema 2a⁰³⁰²¹ double mutants with respect to sema 1a^P1/+ controls (Figure 5A–5H). Moreover, the percentage of hemisegments with aberrant termination in sema 1a^P1, sema 2a⁰³⁰²¹ double mutants, was significantly higher than in either sema 1a^P1 or sema 2a⁰³⁰² single mutants (Figure 5E).

We found that in sema 1a^P1 mutants aberrant class IV axons tend to terminate in layer 1 more often than in layer 2 (Figure 5F). Conversely, in 2a⁰³⁰²¹ mutants, we found that aberrant class IV axons tend to terminate in layer 2 more often than in layer 1 (Figure 5G). In sema 1a^P1, sema 2a⁰³⁰²¹ double mutants (Figure 5H) class IV axons terminate with roughly equal probability in layers 1, 2, or 3. Sema 1a appears to play a more important role in preventing termination in layer 1, followed by layer 3, and a minor role in preventing termination in layer 2. Sema 2a appears to play a more important role in preventing termination in layer 2, and a minor role in preventing termination in layers 1 and 3. Our results suggest that Sema 1a and Sema 2a are instructive for termination of class IV axons along the dorso-ventral axis.

We also assessed the potential roles of Sema 1a and Sema 2a in controlling the termination of class IV axons in the antero-posterior axis by analysing their projections in a top-down view of the neuropile in wild type and in sema 1a, sema 2a double mutants (Figure S7). We chose the sema 1a, sema 2a double mutant for this analysis, because it exhibited the strongest phenotypes in the dorso-ventral axis. Wild-type class IV axons grow asymmetrically, within their normal ventral and medial termination domain, forming thicker terminal in the anterior than in the posterior portion of the segment (Figure S7A). We did not observe a significant loss of this asymmetry in the sema 1a, sema 2a double mutant compared to wild type (Figure S7B and S7C). In top down view, class IV terminals do appear disorganized compared to wild type, but we assume this disorganization is a consequence of the major defects in growth and termination in the dorsoventral axis. Thus Sema 1a and Sema 2a do not appear to play a major role in confining class IV terminals to the anterior portion of the segment. Consistent with this idea is also our finding that the distributions of Sema 1a and Sema 2a appear uniform in the antero-posterior axis, at the time of sensory axon ingrowth into the CNS (Figure S2A and S2B).

sema 1a Is Required Non-Cell-Autonomously to Exclude Class IV Axons from Dorsal Neuropile

In some cases membrane-bound Sema 1a acts as a receptor [18],[32]. Thus, rather than a requirement to act as a cue, the class IV mutant phenotypes could reflect a cell-autonomous requirement for Sema 1a in the sensory neurons themselves. To resolve this, we performed two kinds of rescue experiments.

First, we restored sema 1a expression to sensory neurons in sema 1a^P1mutant embryos using PO163GAL4. Antibody labelling confirms that Sema 1a is successfully targeted to embryonic sensory terminals using this driver (compare Figure 6A, 6C, and 6E) and shows that in the mutant a large fraction of Sema 1a-expressing sensory neurons aberrantly project to the dorsal part of the neuropile (Figure 6E). We then analysed specifically the projections of class IV neurons in embryos where sema 1a expression had been restored to sensory neurons in the sema 1a^P1 mutant background (compare Figure 6B, 6D, and 6F). There was no rescue of the dorsal termination phenotype of class IV axons in these embryos. Quantification revealed no significant reduction in dorsal termination of class IV axons, compared to sema 1a^P1 mutants (Figure 6I). Thus, sema 1a is not required in class IV neurons themselves to exclude their terminals from dorsal neuropile.

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Figure 6. sema 1a is required non-cell autonomously in dorsal neuropile for the ventral projection of Class IV axons.

(A, C, E, and G) Immunofluorescence visualisation of Sema 1a (green) with respect to Fas II tracts (red), in sema 1a/+ control (A), sema 1a^PL mutant (C), sema 1a^PLUAS-sema 1a;PO163GAL4 (E), and sema 1a^PLUAS-sema 1a;HB9GAL4 (G) embryos (21-h old). Images show projections of a confocal z series of transverse sections through A7. (A) Normal pattern of Sema 1a expression in 21-h-old embryos. (C) Sema 1a is absent in sema 1a^PL embryos. (E) Sema 1a is expressed selectively in sensory neuron axons in the sema 1a^PLUAS-sema 1a;PO163GAL4 embryos. Note aberrant entry of many sensory axons into dorsal neuropile in the absence of Sema 1a. (G) Sema 1a is expressed selectively in motor neuron dendrites in dorsal neuropile, in sema 1a^PL, UAS-sema-1a; HB9GAL4 embryos. (B, D, F, and H) Projections of class IV axons (green) and Fas II tracts (red) in sema 1a/+ control (B), sema 1a^PL mutant (D), sema 1a^PLUAS-sema 1a;PO163GAL4 (F), and sema 1a^PLUAS-sema 1a;HB9GAL4 (H) embryos (21-h old). Images show projections of confocal z series of transverse sections through an abdominal segments. (B) Normal class IV md projections. (D) In sema 1a^PL;ppkEGFP embryos class IV axons project aberrantly and terminate in dorsal and central regions of the neuropile (arrow). (F) Restoration of Sema 1a expression in sensory neurons alone in sema 1a^PL, UAS-sema-1a; PO163GAL4, ppkEGFP embryos does not prevent the aberrant dorsal projection (arrow) of class IV neurons. (H) Expression of Sema 1a in motor neuron dendrites in sema 1a^PL, UAS-sema-1a; HB9GAL4, ppkEGFP embryos reduces the aberrant dorsal projection of class IV terminals. Dorsal up. Arrowheads show midline. Scale bar: 8 µm. (I) Quantification of termination phenotypes in the different genetic backgrounds. Graph shows average percentage of hemisegments per embryo (per 14 abdominal hemisegments) with aberrant class IV terminals in layer 1 [Hat(1) = (n hemisegments with terminals in 1/14)×100], in sema 1a^PL/+, sema 1a^PL mutant, sema 1a^PLUAS-sema 1a;PO163GAL4 and sema 1a^PLUAS-sema 1a;HB9GAL4 embryos. Hat(1) is significantly higher in sema 1a^PL (p = 5×10⁻⁵; Student's t-test; average Hat(1) = 7%; n = 21 embryos, 294 hemisegments) and in sema 1a^PL, UAS-sema 1a; PO163-GAL4 embryos (p = 8×10⁻⁶; Student's t-test; average Hat(1) = 14 embryos, 196 hemisegments), than in sema 1a^PL/+ controls (average Hat(1) = 0%, n = 30 embryos, 420 hemisegments). In sema 1a^PL, UAS-sema 1a; PO163-GAL4 embryos there is no reduction in the percentage of hemisegments with terminals in layer 1 compared to sema 1a^PL mutant embryos. sema 1a^PL, UAS-sema 1a; HB9-GAL4 rescue embryos show a significant reduction in hemisegments with terminals in layer 1 (red **, p = 0.004; Student's t-test; average Hat(1) = 1.8%, n = 12 embryos, 168 hemisegments), compared to sema 1a^PL mutant embryos (average Hat(1) = 7%).

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In a second set of experiments, we selectively restored Sema 1a to dorsal neuropile in an otherwise sema 1a^P1 mutant background, by using HB9GAL4 to drive its expression in a subset of motor neurons [33]. We used the HB9GAL4 line for this rescue experiment, because it is expressed before sensory neurons grow into the neuropile, unlike GADGAL4 or OK371GAL4, which are expressed later. We confirmed that Sema 1a is selectively present in dorsal neuropile in these experiments (compare Figure 6A, 6C, and 6G), and we observed a significant reduction in the dorsal termination of class IV axons compared to sema 1a^P1 mutants (Figure 6H and 6I). Thus in an otherwise mutant background, the mutant phenotype of class IV axons can be partially rescued by expressing sema1a dorsally in the dendrites of motor neurons.

We also asked whether restoration of Sema 2a expression in the midline glial cells using the single mindedGAL4 line in an otherwise sema 2a mutant background (sema 2a, UAS-sema 2a;single-mindedGAL4, ppkeGFP) rescues the sema 2a mutant phenotype of class IV axons (see Figure S4 for details of these experiments). We observed a significant reduction in the aberrant termination of class IV axons in layer 2 compared to sema 2a mutant embryos (Figure S4D and S4E).

plex A and plex B Are Both Required to Exclude Class IV Terminals from Regions with High Sema 1a and Sema 2a Expression Levels

The experiments we describe suggest that both Sema 1a and Sema 2a are required as cues to confine class IV sensory axons to ventral neuropile. We also find that expressing either plex A or plex B in sensory neurons is sufficient to shift their terminals away from regions with high levels of Sema 1a and 2a. Thus, a combination of Plexins could be required in ventrally projecting sensory neurons to exclude them from dorsal and central neuropile.

By in situ hybridization we confirmed previous reports [20] that ch, dbd, and class I–IV md neurons express plex B at the time that sensory axons grow into and terminate in the VNC (Figure S8D). By double labelling with anti-Plex A and anti-horseradish peroxidase we confirmed that Plex A is expressed in sensory neuron cell bodies at 13-h AEL (Figure S8A), and by double labelling with anti-Plex A and anti-GFP showed that Plex A is strongly expressed in the ppk-expressing class IV neurons (Figure S8B). Unfortunately, none of these experiments allows us to draw quantitative conclusions about levels of expression in different cells. High background levels also prevented a reliable analysis of Plex A expression along the dorso-ventral axis of the CNS. However antibody labelling against Plex A does reveal expression in the neuropile at 13-h AEL (Figure S8C).

To show whether both Plexins are required to exclude the ventrally projecting sensory neurons from central and/or dorsal neuropile, we analysed the projection pattern of class IV axons in plex A and B mutants.

In plex A^Df(4)C3 mutants, class IV axons project aberrantly to central and/or dorsal neuropile (Figure 7A and 7B). Quantification reveals significantly more terminals in dorsal and central neuropile, compared to wild type (Figure 7G).

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Figure 7. Plex A and Plex B are required in sensory neurons for the ventral termination of Class IV axons.

Projections of class IV axons (green) and Fas II tracts (red) in plex A (A and B), plex B (D and E) mutant, and UAS-PlexA;PO163GAL4;plexA (C), and UAS PlexB;PO163GAL4;plexB (F) rescue embryos (21 h). Images show projections of confocal z series of transverse sections through an abdominal segment. (A and B) In ppkEGFP; plex A embryos, class IV axons project aberrantly through dorsal and central regions (arrows) of neuropile. Fas II tracts appear wild type. (C) Rescue of Plex A expression in sensory neurons alone in UAS-plexA;PO163GAL4,ppkEGFP;plexA embryos is sufficient to prevent aberrant projection of class IV axons to dorsal and central regions of the neuropile. (D and E) In ppkEGFP; plexB embryos class IV axons are severely affected. They grow aberrantly through and often terminate in dorsal and central neuropile (thin arrows). Sometimes they project initially to ventral neuropile (thick arrow in E), then turn dorsally and terminate in dorsal neuropile. The dorsoventral and mediolateral positions of Fas II tracts are also altered in these mutants (white *, wild-type Fas II tract positions). Severity of Fas II phenotype does not correlate with severity of sensory axon phenotype. (F) Rescue of Plex B expression in sensory neurons alone, in UAS-plexB;PO163GAL4,ppkEGFP;plexB embryos prevents aberrant projection of class IV terminals to dorsal and central neuropile. Fas II tracts continue to exhibit the mutant phenotype in these embryos (x denotes wild-type position of M1 tract). Dorsal up. Arrowheads show midline. Scale bar: 8 µm. (G–I) Quantification of termination phenotypes. (G) Chart shows average percentage of hemisegments with aberrant terminals (Hat) in layers 1, 2 and 3 per embryo (per 14 hemisegments) [Hat(1+2+3) = (n hemisegments with terminals in 1, 2, and 3/14)×100] in plex B/+ control; plex A mutants and UAS-plex A;PO163GAL4,ppkEGFP;plex A rescue; plex B mutants and UAS-plex B; PO163GAL4,ppkEGFP; plex B rescue embryos. A significantly higher percentage of hemisegments with aberrant class IV terminals in layers 1, 2, or 3 is observed in both plex A mutants (purple ***, p = 3×10⁻⁴; Student's t-test; average Hat(1+2+3) = 4%; n = 20 embryos, 280 hemisegments) and plex B mutants (purple ***, p = 10×10⁻⁵; Student's t-test; average Hat(1+2+3) = 6%; n = 26 embryos, 364 hemisegments), compared to plex B/+ control embryos (average Hat(1+2+3) = 0%; n = 25 embryos, 350 hemisegments). The percentage of hemisegments with aberrant class IV terminals in plex A-rescue is significantly lower (red ***, p = 8×10⁻⁴; Student's t-test; n = 25 embryos, 350 hemisegments) compared to plex A mutants and not significantly different from plex B/+ controls. Likewise, the percentage of hemisegments with aberrant class IV terminals in plex B-rescue is significantly lower (red ***, p = 2×10⁻⁴; Student's t-test; n = 25 embryos, 350 hemisegments) compared to plex B mutants and not significantly different from plex B/+ controls. (H and I) Pie charts show proportion of hemisegments with class IV axon terminals in layers 1, 2, 3, and 4 (out of the total number of hemisegments analysed pooled from different embryos), in plex A embryos (n = 280) (H) and plex B embryos (n = 364) (I). In plex A mutants 96% of class IV axons terminate in layer 4, whereas 4% aberrantly terminate in layers 1 (2%), or 3 (2%). In plex B mutants 93.7% of class IV axons terminate in layer 4, whereas 6.3% aberrantly terminate in layers 1 (1.9%), 2 (1.9%), or 3 (2.5%).

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In plex B^KG00878 mutants class IV axons also project to dorsal or central neuropile (Figures 7D and 7E). Quantification reveals significantly more terminals in dorsal and central neuropile compared to wild type (Figure 7G).

We also quantified the proportion of terminals in each of the different layers of the neuropile (Figure 7H and 7I). We found that in plex B mutants Class IV axons terminate with roughly equal probability in layers 1, 2, or 3. This suggests that Plex B may normally have a role in preventing termination in layers with high levels of Sema 2a or Sema 1a and may therefore be a functional receptor for both ligands. We also observed that embryos transheterozygous for plex B and either sema 1a (sema 1a/+; plex B/+), sema 2a (sema 2a/+; plex B/+), or plex A (plex B/plex A) all exhibit class IV termination phenotypes, indicating a genetic interaction between these mutations (unpublished data). To further test whether Plex B functions to prevent termination in regions with high Sema 1a levels we analysed the patterns of sensory terminals that overexpress Plex B in a sema 1a mutant (Figure S9). In these embryos we observed a striking expansion of sensory terminals into the intermediate region of layer 1 that normally contains highest Sema 1a levels within this layer (compare Figure S9A and S9B). In a wild-type background Plex B-overexpressing sensory terminals remain confined in the most medial portion of layer 1, even though they become excluded from layer 2 (Figures 2C, S9A). A similar expansion is also observed in plex A^Df(4)C3 mutants, indicating that Plex A function is required to prevent termination in regions with highest levels of Sema 1a (Figure S9C). Interestingly, we found that in the absence of plex A, Plex B overexpression in sensory neurons is sufficient to prevent their expansion into regions with highest Sema 1a levels (in PO163GAL4, UAS-plex B; plex A^Df(4)C3 embryos) (Figure S9D).

Rescuing plex A and plex B in Sensory Neurons Alone Is Sufficient to Prevent the Aberrant Projection of Class IV Neurons to Dorsal and Central Neuropile

To exclude (a) the possibility that plex A and B are required in the central targets of sensory neurons, in which case the mutant phenotypes might be a result of aberrations in normal target directed growth and (b) the possibility that Plex A and B are acting as guidance cues we restored their expression selectively to sensory neurons using the P0163 GAL4 driver. Restoration of Plex B expression selectively in sensory neurons in a plex B^KG00878 mutant background, rescues the phenotype of class IV md neurons (Figure 7E). Quantification reveals significantly fewer aberrant class IV terminals in plex B-rescue embryos as compared to plex B mutants (Figure 7G). The Fas II tracts continued to exhibit mutant phenotypes in these experiments, as would be expected if the rest of the neuropile, other than the sensory neurons, remained mutant (Figure S10).

Likewise, restoration of Plex A expression in sensory neurons in a plex A^Df(4)C3 mutant background, rescued the phenotype of class IV md neurons (Figures 7C). Quantification reveals significantly fewer aberrant class IV terminals in plex A-rescue embryos compared to plex A mutants (Figure 7G). We conclude that both plex A and plex B are required in sensory neurons for the appropriate targeting of class IV axons to the ventral neuropile.

Evidence for Sema/Plexin Signalling Acting in the Dorso-Ventral Axis of the Neuropile

Our initial approach of using a misexpression screen targeted to all sensory axons was sufficient to reveal the existence of the Semas as putative cues in the dorso-ventral axis by showing that there were generalised redistributions of sensory endings in this axis when the cells concerned were forced to express either of the two Sema receptors, Plex A or Plex B. These shifts were readily detectable when the nervous system was viewed in a plane at right angles to the neuraxis.

Viewing the nervous system in this plane also reveals the largely complementary patterns of expression for the two Semas. The membrane bound Sema 1a is distributed in an alternating pattern across the neuropile with high levels in both layers 1 and 3. The secreted Sema, Sema 2a, on the other hand, is expressed at high levels in a central strip that extends across the midline and in gradients that decline ventrally and dorsally orthogonal to the Slit gradient (Figure 2). A gradient of Sema 2a has also been described in the embryonic limb of the grasshopper [38]. There it contributes to the polarized growth of pioneer sensory axons away from the region of highest Sema 2a expression at the tip.

In the developing Drosophila embryo selective overexpression of the putative receptors for Sema 1a and Sema 2a in sensory neurons acts in a predictable fashion to exclude sensory axons and terminals from those regions where the ligands are highly expressed: overexpression of Plex A excludes projections from high levels of Sema 1a expression in layers 1 and 3. Overexpression of Plex B shifts sensory terminals further away from the central layer of the neuropile. These findings suggest that Sema 2a and Sema 1a provide guidance cues to the growth cones of sensory neurons that express Plex A and Plex B. It is consistent with this idea that in the absence of Sema 1a, Plex A overexpression in sensory neurons does not exclude their terminals from regions that normally contain high Sema 1a levels. Similarly, in the absence of Sema 2a, Plex B overexpression in sensory neurons does not exclude their terminals from the central layer of the neuropile.

The manipulations of the pattern of sensory terminals in the dorso-ventral axis found with Plexin overexpression are analogous to the manipulations in the medio-lateral axis that are found with Robo3 misexpression. In both dimensions the position at which sensory neurons form their terminals is determined by their expression of receptors for positional cues.

Sema/Plexin Signalling Guides Termination in the Dorso-Ventral Axis

The most ventrally located sensory terminals, the ppk-expressing md neurons are derived from axons that actually enter the nervous system dorsally and grow downwards, skirting alternative neuropile regions before turning inwards to reach their characteristic medial, ventral domain of termination. A consequence of Sema signalling is that these ventrally targeted axons are excluded from more dorsal regions of the neuropile and channelled instead through a limited lateral region where the expression of both proteins is low, so that their inward migration towards the midline is blocked until they reach the most ventral region. In the absence of either of the Semas or their Plexin receptors, ppk-expressing axons aberrantly enter and terminate in more dorsal regions of the neuropile. This suggests that the growth cones of these cells are attracted towards to midline (we assume by Netrins) [39] as soon as they enter the CNS, but that entry and termination in the more dorsal region of the neuropile is prevented by high levels of Sema 1a in layer 1.

In vertebrates genetic studies show that proprioceptive axons are excluded from the superficial dorsal horn by Sema 6D/6C signalling mediated by Plex A1. Loss of Plex A1 allows proprioceptive collaterals to invade the superficial dorsal horn although most succeed in projecting through it to their normal more ventral target zones [19]. In an analogous (though not topologically equivalent) fashion, ventrally projecting afferents in Drosophila require Sema signalling through Plex A for their proper exclusion from the most dorsal neuropile.

Loss of plex A appears to affect class IV terminals less strongly than loss of sema 1a. One explanation could be that Plex B might also function as a receptor for Sema 1a in this system. Our observation that in plex B mutants class IV axons aberrantly terminate in layers 1, 2, or 3 supports this possibility. We also find that Plex B overexpression in sensory neurons in plex A mutant embryos, prevents aberrant expansion of sensory terminals into intermediate portion of layer 1, which contains very high levels of Sema 1a (Figure S9). Such an expansion occurs in both plex A and sema 1a mutant embryos. High levels of Plex B signalling thus appear to be able to substitute for the absence of Plex A signalling and prevent expansion into regions with high Sema 1a levels. These findings could be explained if Plex B were to function as a lower affinity receptor for Sema 1a, as well as a high affinity receptor for Sema 2a.

Sema 1a and Sema 2a are unlikely to be the only cues that operate in the dorso-ventral axis. The incomplete penetrance of the termination phenotype in the sema 1a, sema 2a double mutant suggests that additional factors may operate to control the ventral targeting of class IV axons. There may be long range ventral attractants or local substrate bound attractive cues for these axons in the neuropile. It is also likely that dorsally and centrally located sensory and interneuron terminals, as well as dendrites of motor neurons may require additional signals to exclude them from ventral neuropile. Such signals could be the other Semas. Alternatively, by analogy with the optic tectum, where Wnt signalling drives dorsal projections and Ephrins dictate ventral projections, it is possible that some other signalling system may operate with Semas to confine dorsally projecting neurons to dorsal neuropile [3],[40],[41].

Type-Specific Repulsion in the VNC

In the fly antennal lobe, during the formation of the olfactory map, Sema 1a expression on the surfaces of antennal olfactory receptor neuron (ORN) axons excludes Plex A expressing maxillary palp ORN axons from inappropriate glomeruli [22],[23].

Our findings suggest that much of the Sema 1a expression in the neuropile of the VNC is on the surfaces of motor neuron dendrites and on the projections of the GABAergic interneurons. Thus, there appear to be two kinds of positional cues in the neuropile. Slit and Sema 2a are examples of secreted and possibly glia-mediated positional cues. Sema 1a on the other hand is presented on membranes of particular neuronal classes (GABAergic interneurons and motorneurons) and is a repellent for the axons of at least one other type of neuron (class IV md neurons). Thus, the presentation of repellent molecules on the surfaces of subsets of neurons can act to exclude specific classes of axons from particular regions of the neuropile.

Positional Cues Subdivide the Neuropile into Different Termination Domains within Which Connections Form

Theoretical models for gradient-guided axonal growth and targeting during the formation of 2-D neural maps, such as the retinotopic projections, require at least one gradient in each of the two—not necessarily Cartesian—dimensions [42]. These ideas have been borne out by experimental findings. Gradients of attractants and repellents in one dimension have been implicated in providing positional information for terminating sensory axons during the formation of both continuous and discrete neural maps [18],[43],[44]. Furthermore, a recent study has shown that two orthogonal systems of graded cues operate to specify position of termination along each axis of a somatotopic map in the optic tectum.

Our findings address the larger issue of how termination of distinct neuron classes is regulated within a complex meshwork of differentiating axons and dendrites. They suggest that similar mechanisms that are used for the establishment of neural maps, only involving generalized positional cues in each dimension, control targeting of many different classes of neurons to specific termination domains within a complex neuropile.

Although the evidence we provide here suggests that positional cues can specify particular domains for the termination of sensory neurons, we do not suppose that the control of termination and branching by a pervasive system of positional cues would necessarily be sufficient to allow connections to form selectively and specifically between appropriate pre- and postsynaptic partners. What such a system does provide is a framework of signals that could regulate simultaneously the growth of axons and dendrites of many different neurons and induce their termination and branching in appropriate parts of the developing network. Within these restricted regions it is likely that further, localised mechanisms, including competitive interactions, patterns of activity, and target derived cues might all be required to control synaptogenesis and determine the emergence of precise patterns of connectivity within a termination domain.

Coordinate Positioning of Pre- and Postsynaptic Terminals by the Same Cues?

If the pattern of sensory axon termination within the neuropile is controlled by a system of positional cues, most likely, in three dimensions, it may well be that the location of their postsynaptic dendrites is determined in a similar fashion. If this were the case, the matched expression of receptors for the same system of signals by pre- and postsynaptic neurites would guide them to a common volume as a prelude to the formation of synaptic connections between them. Recent studies that show that developing motor neuron dendrites respond to some of the same cues as terminating sensory axons provide indirect evidence for common systems of positional cues leading to the coordinate targeting of presynaptic axons and postsynaptic dendrites [45],[46]. A direct test of this hypothesis, however, must await the identification of the postsynaptic interneurons with which developing sensory neurons form connections. It will then be possible to make a direct investigation of the molecular mechanisms that control the termination and branching of pre- and postsynaptic endings and thereby lay out a ground plan for connectivity within the developing neuropile.

Fly Stocks

For mutant analyses sema 2a⁰³⁰²¹ [25], sema 1a^P1 [26], plex A^Df(4)C3 [47], and plex B^KG00878 [21],[48] were crossed into the ppkEGFP [9] stock. Stocks were made using GFP balancers [49]. Homozygous mutant embryos were identified by lack of GFP. For misexpression we used the following stocks: UAS-robo3 [50],[51] inserts on second and third chromosome, UAS-plexB [21] and UAS-plexA-HA [47], UAS-robo2 [51], UAS-ephrin [52],[53], UAS-eph [52], UAS-unc5 [54], UAS-frazzled [55], UAS-drl-DN [56], UAS-comm [57], UAS-robo, 410 EP-lines from the Rorth collection [58],[59]. For the misexpression screen the UAS-lines were crossed into the PO163GAL4, UAS-n-syb-GFP stock [14],[60]. For rescue experiments the following embryos were analysed: UAS-sema 1a, sema 1a^P1; PO163GAL4, ppkEGFP [26], UAS-sema 1a, sema 1a^P1; HB9GAL4, ppkEGFP; UAS-plexA-HA/+; PO163GAL4, ppkEGFP/+; plex A^Df(4)C3, and UAS-plex B/PO163GAL4, ppkEGFP; plex B^KG00878. We also used OK371GAL4 (gift of M. Landgraf), GADGAL4 [29], single mindedGAL4 [31], UAS-reaper [27] and wnt5^D7 stocks [56].

Dissection

Embryos were staged and VNCs dissected out embryos as previously described [6],[61],[62]. For overexpression experiments embryos were grown at 29°C. VNCs were mounted with brain lobes down and VNC up to allow rapid, high-resolution, confocal imaging of transverse planes, perpendicular to the neuraxis.

Immunocytochemistry

We used the following primary antibodies: anti-Sema 2a (MAb 19C2, developed by C. Goodman), anti-Slit (MAb C555.6D, developed by S. Artavanis-Tsakonas), anti-Fas II (MAb 1D4, developed by C. Goodman), and anti-Repo (MAb 8D12, developed by C. Goodman) supplied by the Developmental Studies Hybridoma bank (1∶10 dilution); anti-Sema 1a (1∶1,000 dilution, kindly provided by A. Kolodkin [26]; anti-Plex A (1∶500 dilution, kindly provided by L. Luo) [23], and Cy5-conjugated goat anti-horseradish peroxidase (1∶100 dilution; Jackson ImmunoResearch). Secondary antibodies were used at 1∶500 dilution: Alexa488-conjugated donkey anti-goat, Alexa488-conjugated goat anti-rabbit, Alexa633-conjugated goat anti-mouse, Alexa633-conjugated rabbit anti-mouse (Molecular Probes). Standard immunocytochemical procedures were followed [63], and immunofluorescence was visualised with Leica SP1 and Zeiss LSM confocal microscopes. Images are maximum projections of confocal z series processed with Adobe Photoshop software.

Quantification Procedures

For quantification of Sema 2a gradients at 13-h AEL nine VNCs stained for Sema 2a were randomly chosen and A7 imaged using a Leica SP1. A confocal section was randomly chosen from each stack, the dorso-ventral axis manually drawn, and the neuropile was divided into nine equal dorso-ventral stripes, perpendicular to the midline and the average fluorescence intensity in each stripe was calculated. Values from different nerve cords were normalized such that the average intensity from each nerve cord was 1. For quantification of the Slit gradient at 13 h, 12 VNCs stained for Slit were randomly chosen, and A7 was imaged using a Leica SP1. A confocal section was randomly chosen from each stack, a line on either side of the midline was manually drawn, and the neuropile on either side of the midline was divided into four mediolateral stripes. The average fluorescence intensity in each stripe was calculated and normalised as above.

For a statistical analysis of defects in the pattern of sensory terminals (visualized with PO163GAL4, UAS-n-syb-GFP) along the medio-lateral axis we quantified the normalised surface area occupied by sensory terminals (sensory area, SA) in the medial domain of the neuropile (SA_M/T = SA[medial]/SA[medial+intermediate+lateral]) in randomly chosen transverse confocal sections from 30 different hemisegments for each genotype. Within a single embryo, we selected every tenth section (all confocal sections were 1-µm thick so that the analyzed sections were 10 µm apart from each other). A Student's t-test was used to compare the mean SA_M/T for the different genotypes.

For a statistical analysis of expansion or exclusion of sensory terminals (visualized with PO163GAL4, UAS-n-syb-GFP) into different dorso-ventral layers we compared SA in layer 2 (SA_2/h = SA(layer 2)/[hemisegment surface area]) or SA in layers 1, 3, and 4 (SA_1+3+4/h = SA[layer 1+3+4]/[hemisegment surface area]) in randomly chosen transverse confocal sections from more than 30 different hemisegments for each genotype. Within a single embryo, we selected every tenth section (all confocal sections were 1-µm thick so that the analyzed sections were 10 µm apart from each other). A Student's t-test was used to compare the mean SA_2/h or SA_1+3+4/h for the different genotypes.

For a statistical analysis of termination defects class IV md axons in the dorso-ventral axis, we quantified the percentage of hemisegments with aberrant terminals (Hat) in layers 1, 2, and 3 per embryo (per 14 hemisegments): Hat(1, 2, or 3) = (n hemisegments with terminals in 1, 2, or 3/14)×100 and the total percentage of hemisegments with aberrant terminals per embryo [Hat(1+2+3) = Hat(1)+Hat(2)+Hat(3)]. A Student's t-test was used to compare the mean Hat for the different genotypes. In some cases we also quantified the average (per embryo) relative proportion of hemisegments with aberrant terminal in each layer: Hat(1)/Hat(1+2+3), Hat(2)/Hat(1+2+3), and Hat(3)/Hat(1+2+3). We counted as “aberrant” only those hemisegments with terminals in layers 1, 2, or 3 (Figure S5A and S5B). We did not count as “aberrant” those axons that exhibit the aberrant growth, with normal termination phenotype (Figure S5C).