a | Hypergeometric | Fisher's exact | 95% CI = 1.4–491.2 |
b | Hypergeometric | Fisher's exact | 95% CI = 23.8–58.0 |
c | Hypergeometric | Fisher's exact | 95% CI = 3.2–1229.8 |
d | Approximately normal | Welch t test | 95% CI = −3.3 to −1.6, alternative hypothesis: true difference in means is not equal to 0 |
e | Non-normal | Empirical p value | NA |
f | Non-normal | Spearman rank correlation | NA |
g | Approximately normal | Welch t test | NA; no specific p values reported, rather a group of genes under a specified p value threshold |
h | Approximately normal | Welch t test | 95% CI = −3.0 to −0.1, alternative hypothesis: true difference in means is not equal to 0 |
i | Approximately normal | Welch t test | 95% CI = −1.3 to −0.1, alternative hypothesis: true difference in means is not equal to 0 |
j | Approximately normal | Welch t test | 95% CI = 0.3–1.6, alternative hypothesis: true difference in means is not equal to 0 |
k | Approximately normal | Welch t test | NA; no specific p values reported, rather a group of genes above a specified p value threshold (e.g., not significant) |
l | Approximately normal | Welch t test, one-sided (due to specific prior hypothesis as to direction of effect; results still significant using a two-sided test at a threshold of α = 0.05) | 95% CI = 0.1 to ∞], alternative hypothesis: true difference in means is not equal to 0 |
m | Non-normal | χ2 test of ODS counts | NA |