Table 5.

Genes differentially expressed in ipsilateral versus contralateral RGCs.

Probe set IDGene symbolFold changep-valueRegulationEntrez gene ID
1437726_x_atC1qb63.100.0001Up12260
1419872_atCsf1r47.490.0000Up12978
1448591_atCtss36.910.0003Up13040
1434366_x_atC1qb36.620.0004Up12260
1452141_a_atSepp131.760.0000Up20363
1436905_x_atLaptm521.920.0040Up16792
1448617_atCd5319.880.0023Up12508
1449401_atC1qc18.750.0002Up12262
1437992_x_atGja117.610.0008Up14609
1450792_atTyrobp17.540.0012Up22177
1427683_atEgr217.350.0002Up13654
1419561_atCcl317.300.0005Up20302
1422903_atLy8614.980.0002Up17084
1418204_s_atAif114.640.0011Up11629
1415800_atGja113.850.0015Up14609
1427076_atMpeg112.730.0001Up17476
1448392_atSparc12.470.0000Up20692
1416589_atSparc12.240.0000Up20692
1437983_atSall111.810.0010Up58198
1438945_x_atGja111.250.0012Up14609
1433933_s_atSlco2b110.560.0014Up101488
1419873_s_atCsf1r10.410.0006Up12978
1415931_atIgf29.710.0006Up16002
1427682_a_atEgr29.510.0005Up13654
1426340_atSlc1a39.470.0020Up20512
1431724_a_atP2ry129.410.0003Up70839
1431057_a_atPrss239.390.0006Up76453
1417457_atCks29.150.0032Up66197
1460180_atHexb8.920.0003Up15212
1448891_atFcrls8.720.0021Up80891
1438658_a_atS1pr38.580.0013Up13610
1423452_atStk17b8.530.0012Up98267
1456219_atLOC1000459888.470.0007Up100045988
1452519_a_atZfp368.280.0002Up22695
1434745_atCcnd28.170.0012Up12444
1439067_atLair18.140.0101Up52855
1417496_atCp8.120.0030Up12870
1422313_a_atIgfbp57.920.0087Up16011
1416124_atCcnd27.730.0221Up12444
1424118_a_atSpc257.670.0029Up66442
1456140_atLOC1000459887.470.0011Up100045988
1416967_atSox27.460.0287Up20674
1417394_atKlf47.380.0000Up16600
1439902_atC5ar17.380.0078Up12273
1451318_a_atLOC676654///Lyn7.240.0024Up17096///676654
1426454_atArhgdib7.170.0030Up11857
1437874_s_atHexb7.140.0012Up15212
1450644_atZfp36l17.010.0043Up12192
1452031_atSlc1a36.910.0006Up20512
1448160_atLcp16.890.0014Up18826
1420029_atMcm36.890.0129Up17215
1455333_atTns36.830.0022Up319939
1429428_atTcf7l26.760.0019Up21416
1439040_atCenpe6.530.0288Up229841
1436174_atAtad26.500.0052Up70472
1450923_atTgfb26.360.0055Up21808
1416855_atGas16.340.0081Up14451
1422134_atFosb6.320.0163Up14282
1450779_atFabp76.320.0088Up12140
1446742_atNfia6.310.0075Up18027
1435436_atEpas16.310.0010Up13819
1419309_atPdpn6.230.0019Up14726
1436756_x_atHadh6.210.0276Up15107
1426910_atPawr6.120.0328Up114774
1453748_a_atKif236.060.0268Up71819
1455556_atNotch26.020.0307Up18129
1421492_atPtgds26.020.0003Up54486
1450567_a_atCol2a16.000.0027Up12824
1436694_s_atNeurod46.000.0133Up11923
1456060_atMaf5.950.0041Up17132
1450922_a_atTgfb25.930.0326Up21808
1445740_at5.910.0364Up
1421301_atZic25.780.0164Up22772
1458447_atCenpf5.760.0249Up108000
1448475_atOlfml35.710.0000Up99543
1451538_atSox95.690.0034Up20682
1441520_atAspm5.680.0242Up12316
1417458_s_atCks25.670.0016Up66197
1423477_atZic15.670.0022Up22771
1422814_atAspm5.640.0175Up12316
1422694_atTtyh15.460.0038Up57776
1416816_atNek75.420.0113Up59125
1436363_a_atNfix5.270.0036Up18032
1434437_x_atRrm25.150.0108Up20135
1452428_a_atB2m5.110.0036Up12010
1448152_atIgf25.100.0050Up16002
1425598_a_atLOC676654///Lyn5.070.0206Up17096///676654
1448201_atSfrp25.060.0035Up20319
1455604_atFzd55.040.0236Up14367
1452114_s_atIgfbp55.020.0055Up16011
1425926_a_atOtx25.020.0213Up18424
1451047_atItm2a5.000.0037Up16431
1423311_s_atTpbg4.990.0082Up21983
1455899_x_atSocs34.980.0082Up12702
1421836_atMtap74.960.0180Up17761
1452459_atAspm4.920.0080Up12316
1450857_a_atCol1a24.920.0288Up12843
1428481_s_atCdca84.910.0334Up52276
1426817_atMki674.890.0186Up17345
1458869_at2900076A13Rik4.780.0259Up73002
1449363_atAtf34.780.0002Up11910
1436221_atIldr24.740.0060Up100039795
1437173_atS1pr34.740.0115Up13610
1418317_atLhx24.720.0086Up16870
1416123_atCcnd24.710.0040Up12444
1421088_atGpc44.700.0005Up14735
1453753_atDtl4.700.0286Up76843
1434767_atC794074.660.0178Up217653
1455972_x_atHadh4.510.0143Up15107
1459894_atIqgap24.510.0151Up544963
1452217_atAhnak4.500.0059Up66395
1417150_atSlc6a44.490.0038Up15567
1428105_atTpx24.430.0147Up72119
1423100_atFos4.390.0007Up14281
1417073_a_atQk4.390.0147Up19317
1447488_at4.260.0093Up
1418289_atNes4.260.0059Up18008
1421163_a_atNfia4.230.0112Up18027
1437244_atGas2l34.210.0056Up237436
1420028_s_atLOC100045677///Mcm34.180.0065Up100045677///17215
1439627_atZic14.150.0237Up22771
1437347_atEdnrb4.140.0278Up13618
1437626_atZfp36l24.140.0126Up12193
1438303_atTgfb24.130.0316Up21808
1440924_atKif20b4.110.0375Up240641
1436293_x_atIldr24.110.0263Up100039795
1435963_atSema5b4.110.0067Up20357
1436329_atEgr34.110.0055Up13655
1448734_atCp4.090.0167Up12870
1417534_atItgb54.070.0004Up16419
1431115_atTgif24.070.0031Up228839
1448229_s_atCcnd24.050.0247Up12444
1426639_a_atTcf7l24.010.0112Up21416
1449705_x_atLOC100045677///Mcm33.990.0024Up100045677///17215
1450781_atHmga23.980.0068Up15364
1448606_atLpar13.960.0042Up14745
1449289_a_atB2m3.950.0029Up12010
1428142_atEtv53.920.0093Up104156
1425811_a_atCsrp13.920.0187Up13007
1416309_atNusap13.910.0222Up108907
1421317_x_atMyb3.910.0273Up17863
1423586_atAxl3.890.0002Up26362
1417419_atCcnd13.880.0228Up12443
1422929_s_atAtoh73.870.0095Up53404
1450379_atMsn3.830.0013Up17698
1448363_atYap13.820.0007Up22601
1455990_atKif233.820.0069Up71819
1428786_atNckap1l3.800.0034Up105855
1425457_a_atGrb103.790.0182Up14783
1450843_a_atSerpinh13.780.0023Up12406
1415945_atMcm53.770.0066Up17218
1417911_atCcna23.770.0354Up12428
1419943_s_atCcnb13.770.0110Up268697
1449577_x_atTpm23.760.0048Up22004
1423852_atShisa23.760.0050Up219134
1460291_atCdk63.740.0015Up12571
1424603_atSumf13.720.0265Up58911
1448519_atTead23.720.0072Up21677
1417506_atGmnn3.700.0248Up57441
1416340_a_atMan2b13.690.0020Up17159
1419944_atCcnb13.690.0190Up268697
1426341_atSlc1a33.650.0013Up20512
1417395_atKlf43.650.0030Up16600
1429189_atArsb3.650.0062Up11881
1436708_x_atMcm43.640.0223Up17217
1442340_x_atCyr613.620.0172Up16007
1418912_atPlxdc23.590.0032Up67448
1417494_a_atCp3.590.0260Up12870
1454834_atNfib3.580.0047Up18028
1452954_atUbe2c3.580.0329Up68612
1420904_atIl17ra3.560.0026Up16172
1434079_s_atMcm23.550.0083Up17216
1455287_atCdk63.540.0154Up12571
1424099_atGpx83.530.0044Up69590
1448883_atLgmn3.490.0125Up19141
1424629_atBrca13.460.0227Up12189
1448627_s_atPbk3.440.0083Up52033
1417420_atCcnd13.430.0220Up12443
1447839_x_atAdm3.420.0179Up11535
1456733_x_atSerpinh13.420.0075Up12406
1430164_a_atGrb103.420.0122Up14783
1435176_a_atId23.400.0062Up15902
1456772_atNcf13.380.0025Up17969
1443047_at3.380.0001Up
1436847_s_atCdca83.350.0299Up52276
1459713_s_atAno13.350.0188Up101772
1416006_atMdk3.320.0078Up17242
1442280_atD2Ertd750e3.300.0093Up51944
1418049_atLtbp33.280.0175Up16998
1438588_atPlagl13.270.0301Up22634
1427276_atSmc43.240.0269Up70099
1416846_a_atPdzrn33.220.0341Up55983
1427275_atSmc43.220.0204Up70099
1419647_a_atIer33.220.0013Up15937
1415810_atUhrf13.220.0051Up18140
1423250_a_atTgfb23.210.0232Up21808
1434945_atLpcat23.210.0223Up270084
1450082_s_atEtv53.200.0007Up104156
1417450_a_atTacc33.200.0318Up21335
1455154_atGli33.190.0149Up14634
1437687_x_atFkbp93.190.0013Up27055
1426600_atSlc2a13.190.0159Up20525
1448698_atCcnd13.130.0332Up12443
1448620_atFcgr33.130.0068Up14131
1423608_atItm2a3.120.0292Up16431
1416757_atZwilch3.090.0066Up68014
1417533_a_atItgb53.090.0087Up16419
1434936_atHirip33.090.0271Up233876
1452540_a_atHist1h2bc///Hist1h2be///Hist1h2bl///Hist1h2bm///Hist1h2bp///LOC100046213///LOC665622///RP23-38E20.13.080.0272Up100046213///319179///319185///319186///319188///665596///665622///68024
1417821_atD17H6S56E-53.070.0195Up110956
1419700_a_atProm13.070.0023Up19126
1437418_at1000417993.060.0022Up100041799
1417133_atPmp223.060.0289Up18858
1422432_atDbi3.060.0042Up13167
1450481_atMybl13.050.0335Up17864
1460220_a_atCsf13.050.0013Up12977
1416440_atCd1643.030.0022Up53599
1423593_a_atCsf1r3.020.0035Up12978
1450920_atCcnb23.020.0163Up12442
1417495_x_atCp3.020.0131Up12870
1424991_s_atTyms///Tyms-ps3.000.0181Up22171///22172
1448148_atGrn3.000.0070Up14824
1436514_atGpc43.000.0172Up14735
1429171_a_atNcapg2.960.0178Up54392
1426246_atPros12.940.0004Up19128
1423775_s_atPrc12.930.0300Up233406
1418633_atNotch12.930.0120Up18128
1454714_x_atEG665516///EG666036///EG668771///Phgdh2.920.0090Up236539///665516///666036///668771
1437478_s_atEfhd22.920.0031Up27984
1416368_atGsta42.920.0003Up14860
1450686_atPon22.910.0118Up330260
1450020_atCx3cr12.900.0203Up13051
1452040_a_atCdca32.900.0375Up14793
1418340_atFcer1g2.870.0006Up14127
1422445_atItga62.870.0006Up16403
1420643_atLfng2.860.0033Up16848
1448314_atCdc2a2.860.0183Up12534
1444257_atPrr112.840.0147Up270906
1428227_atRest2.840.0252Up19712
1423298_atAdd32.810.0051Up27360
1451080_atUsp12.810.0232Up230484
1429190_atArsb2.800.0032Up11881
1433492_atEpb4.1l22.790.0019Up13822
1448232_x_at100042266///EG434428///EG636070///LOC100044416///LOC100045728///Tuba1a///Tuba1b///Tuba1c2.780.0019Up100042266///100044416///100045728///22142///22143///22146///434428///636070
1417947_atPcna2.770.0086Up18538
1422444_atItga62.760.0054Up16403
1420820_at2900073G15Rik2.750.0247Up67268
1455393_atCp2.750.0072Up12870
1433490_s_atEpb4.1l22.750.0027Up13822
1433857_atFat12.740.0126Up14107
1417985_atNrarp2.740.0134Up67122
1452035_atCol4a12.730.0024Up12826
1452404_atPhactr22.730.0040Up215789
1422706_atPmepa12.730.0139Up65112
1434474_atAbca52.730.0042Up217265
1416630_atId32.720.0021Up15903
1417065_atEgr12.700.0052Up13653
1442728_at2.700.0124Up
1422612_atHk22.690.0005Up15277
1424604_s_atSumf12.680.0215Up58911
1425271_atPsmc3ip2.680.0137Up19183
1450533_a_atPlagl12.670.0280Up22634
1456567_x_atGrn2.670.0009Up14824
1448474_atNek72.650.0055Up59125
1435578_s_atDab12.640.0240Up13131
1416724_x_atTcf42.640.0110Up21413
1449888_atEpas1///LOC1000485372.640.0166Up100048537///13819
1417878_atE2f12.640.0327Up13555
1417483_atNfkbiz2.630.0185Up80859
1452881_atGins22.620.0103Up272551
1449140_atNudcd22.620.0150Up52653
1444800_at2.610.0099Up
1416251_atMcm62.610.0322Up17219
1423414_atPtgs12.590.0093Up19224
1420171_s_atMyh92.580.0015Up17886
1460184_atHadh2.570.0092Up15107
1425458_a_atGrb102.560.0193Up14783
1417822_atD17H6S56E-52.560.0079Up110956
1418634_atNotch12.530.0080Up18128
1425314_atGpr982.530.0256Up110789
1459740_s_atUcp22.520.0141Up22228
1427762_x_atHist1h2bp2.520.0278Up319188
1423596_atNek62.510.0283Up59126
1422938_atBcl22.510.0110Up12043
1448272_atBtg22.510.0009Up12227
1416214_atMcm42.490.0136Up17217
1434069_atPrex12.490.0081Up277360
1423675_atUsp12.490.0195Up230484
1448259_atFstl12.470.0077Up14314
1416433_atRpa22.470.0102Up19891
1422016_a_atCenph2.460.0347Up26886
1432604_atRbl12.460.0293Up19650
1422695_atTtyh12.450.0131Up57776
1438629_x_atGrn2.450.0006Up14824
1424089_a_atTcf42.450.0056Up21413
1416498_atPpic2.440.0289Up19038
1420824_atSema4d2.430.0116Up20354
1416431_atTubb62.410.0185Up67951
1454830_atFbn22.400.0065Up14119
1423660_atCtdsp2///ENSMUSG000000405402.400.0178Up100043719///52468
1420172_at2.390.0069Up
1444785_at2.390.0120Up
1422831_atFbn22.390.0065Up14119
1445597_s_atPla2g162.390.0075Up225845
1418690_atPtprz12.390.0015Up19283
1433991_x_atDbi2.380.0241Up13167
1421814_atMsn2.380.0088Up17698
1429556_at2610024B07Rik2.380.0154Up269987
1446172_at2.370.0091Up
1418099_atTnfrsf1b2.360.0222Up21938
1420959_atAsph2.360.0280Up65973
1426936_at629242///BC005512///F630007L15Rik2.360.0322Up192885///629242///641366
1438093_x_atDbi2.350.0242Up13167
1426653_atLOC100045677///Mcm32.340.0146Up100045677///17215
1453007_at3110082I17Rik2.340.0141Up73212
1416653_atLOC100047484///Stxbp3a2.330.0028Up100047484///20912
1420774_a_at4930583H14Rik2.330.0098Up67749
1421867_atNr3c12.320.0021Up14815
1426195_a_atCst32.320.0009Up13010
1428029_a_atH2afv2.320.0121Up77605
1442058_s_atPsmc3ip2.320.0022Up19183
1429270_a_atSyce22.310.0096Up71846
1448139_atMlc12.300.0218Up170790
1416049_atGldc2.290.0171Up104174
1447878_s_atFgfrl1///LOC1000462392.280.0098Up100046239///116701
1442215_atSmo2.280.0124Up319757
1433491_atEpb4.1l22.280.0027Up13822
1422537_a_atId22.270.0003Up15902
1439453_x_atRnaseh2c2.270.0284Up68209
1434768_atTpp12.270.0060Up12751
1456245_x_atVamp32.270.0352Up22319
1456439_x_atMical12.270.0059Up171580
1453183_at1110034A24Rik2.260.0056Up109065
1452928_atAbi32.260.0098Up66610
1442003_atDiap22.250.0028Up54004
1428670_atLOC725202.250.0136Up72520
1455976_x_atDbi2.250.0216Up13167
1438852_x_atMcm62.230.0242Up17219
1434150_a_atHigd1c///Mettl7a1///Mettl7a22.220.0070Up380975///393082///70152
1439436_x_atIncenp2.220.0275Up16319
1455956_x_atCcnd22.220.0156Up12444
1460247_a_atSkp22.210.0335Up27401
1416986_a_atSirpa2.210.0077Up19261
1437894_atProx12.200.0074Up19130
1417472_atMyh92.200.0054Up17886
1422881_s_atSypl2.200.0046Up19027
1423674_atUsp12.190.0341Up230484
1425565_atRest2.190.0031Up19712
1437865_atSpata132.190.0038Up219140
1437708_x_atVamp32.190.0093Up22319
1439060_s_atWipi12.180.0017Up52639
1416221_atFstl12.160.0008Up14314
1416250_atBtg22.160.0304Up12227
1437623_x_atXrcc32.160.0082Up74335
1460559_atKank22.160.0361Up235041
1428853_atPtch12.160.0125Up19206
1433645_atSlc44a12.150.0013Up100434
1452671_s_atLman12.150.0210Up70361
1442014_at2.150.0093Up
1450641_atVim2.140.0275Up22352
1454777_atSlco2b12.130.0158Up101488
1428976_atTmpo2.130.0374Up21917
1456133_x_atItgb52.130.0020Up16419
1444443_at2.130.0004Up
1460344_at2310033F14Rik2.130.0044Up69555
1420380_atCcl22.120.0057Up20296
1416985_atSirpa2.120.0046Up19261
1423424_atZic32.120.0321Up22773
1423493_a_atNfix2.110.0328Up18032
1426412_atNeurod12.110.0144Up18012
1422286_a_atTgif12.110.0200Up21815
1418534_atFzd22.110.0030Up57265
1416122_atCcnd22.100.0002Up12444
1416076_atCcnb1///EG434175///EG6670052.100.0272Up268697///434175///667005
1439562_atF730047E07Rik2.090.0228Up212377
1415834_atDusp62.090.0051Up67603
1447448_s_atKlf62.090.0134Up23849
1448118_a_atCtsd2.090.0129Up13033
1447852_x_atRilpl12.080.0025Up75695
1429295_s_atTrip132.080.0320Up69716
1419951_atLman12.080.0322Up70361
1442134_atPrr112.080.0301Up270906
1416992_atLOC100046464///Mfng2.080.0013Up100046464///17305
1434149_atTcf42.080.0328Up21413
1433916_atVamp32.080.0244Up22319
1415691_atDlg1///LOC1000476032.070.0173Up100047603///13383
1420970_atAdcy72.070.0023Up11513
1449127_atSelplg2.070.0195Up20345
1435657_atSton22.070.0162Up108800
1434503_s_atLamp22.050.0169Up16784
1423871_atTmem63a2.040.0002Up208795
1417870_x_atCtsz2.040.0085Up64138
1443231_at2.030.0323Up
1425166_atRbl12.030.0252Up19650
1417709_atCyp46a12.020.0017Up13116
1424265_atNpl2.020.0064Up74091
1424299_atOma12.020.0198Up67013
1423434_atTead12.020.0279Up21676
1448777_atMcm22.020.0375Up17216
1453314_x_at2610039C10Rik2.020.0150Up66578
1417470_atApobec32.010.0301Up80287
1429894_a_atMtap72.010.0043Up17761
1428094_atLamp22.010.0027Up16784
1435526_atTor1aip22.000.0095Up240832
1440270_atFgf12-2.020.0099Down14167
1453856_atZbtb46-2.030.0149Down72147
1441949_x_atSlc39a6-2.030.0136Down106957
1459903_atSema7a-2.030.0216Down20361
1429464_atPrkaa2-2.040.0028Down108079
1437982_x_atCox15-2.050.0340Down226139
1458464_atHecw2-2.050.0251Down329152
1419717_atSema3e-2.060.0053Down20349
1450151_atZfp316-2.060.0189Down54201
1437401_atIgf1-2.060.0083Down16000
1435064_a_atTmem27-2.070.0097Down57394
1423328_atGdap1-2.090.0084Down14545
1438664_atPrkar2b-2.100.0329Down19088
1418288_atLpin1-2.110.0343Down14245
1426446_at6430548M08Rik-2.110.0262Down234797
1435974_atArhgef9-2.130.0215Down236915
1434027_atRcan3-2.130.0225Down53902
1425158_atTbx20-2.150.0015Down57246
1455194_atMapk8ip2-2.160.0182Down60597
1433601_atAdra2a-2.180.0341Down11551
1455633_atZfp647-2.180.0182Down239546
1420955_atVsnl1-2.190.0225Down26950
1429668_atPou4f1-2.200.0005Down18996
1436937_atRbms3-2.200.0318Down207181
1427673_a_atSema3e-2.200.0034Down20349
1438697_atTmem132c-2.220.0244Down208213
1424482_atArhgef7-2.220.0047Down54126
1420679_a_atAig1-2.230.0077Down66253
1457793_a_atWhsc1l1-2.260.0347Down234135
1419458_atRgnef-2.270.0302Down110596
1436014_a_atRusc1-2.280.0071Down72296
1439852_at-2.310.0237Down
1429696_atGpr123-2.330.0153Down52389
1444923_at-2.350.0203Down
1418847_atArg2-2.370.0065Down11847
1420448_atRhox2a-2.390.0365Down75199
1455358_atA2bp1-2.440.0000Down268859
1417679_atGfi1-2.470.0028Down14581
1447788_s_atTspyl3-2.510.0243Down241732
1442226_atSema3e-2.520.0358Down20349
1458623_at-2.530.0159Down
1428568_atB230217C12Rik-2.630.0015Down68127
1416286_atRgs4-2.680.0023Down19736
1434413_atIgf1-2.770.0009Down16000
1429273_atBmper-2.830.0025Down73230
1447552_s_at-3.010.0137Down
1452444_atNapb-3.050.0172Down17957
  • Genes that were enriched by 2-fold or more with corrected p-value <=0.05 in either the ipsilateral or contralateral RGC population were selected for this list.