List of brain regions
| Region no. | Region abbreviation | Region name | Region category |
|---|---|---|---|
| 1 | FRP | Frontal pole, cerebral cortex | Isocortex |
| 2 | MOp | Primary motor area | Isocortex |
| 3 | MOs | Secondary motor area | Isocortex |
| 4 | SSp-n | Primary somatosensory area, nose | Isocortex |
| 5 | SSp-bfd | Primary somatosensory area, barrel field | Isocortex |
| 6 | SSp-ll | Primary somatosensory area, lower limb | Isocortex |
| 7 | SSp-m | Primary somatosensory area, mouth | Isocortex |
| 8 | SSp-ul | Primary somatosensory area, upper limb | Isocortex |
| 9 | SSp-tr | Primary somatosensory area, trunk | Isocortex |
| 10 | SSp-un | Primary somatosensory area, unassigned | Isocortex |
| 11 | SSs | Supplemental somatosensory area | Isocortex |
| 12 | GU | Gustatory areas | Isocortex |
| 13 | VISC | Visceral area | Isocortex |
| 14 | AUDd | Dorsal auditory area | Isocortex |
| 15 | AUDp | Primary auditory area | Isocortex |
| 16 | AUDpo | Posterior auditory area | Isocortex |
| 17 | AUDv | Ventral auditory area | Isocortex |
| 18 | VISal | Anterolateral visual area | Isocortex |
| 19 | VISam | Anteromedial visual area | Isocortex |
| 20 | VISl | Lateral visual area | Isocortex |
| 21 | VISp | Primary visual area | Isocortex |
| 22 | VISpl | Posterolateral visual area | Isocortex |
| 23 | VISpm | Posteromedial visual area | Isocortex |
| 24 | VISli | Isocortex | |
| 25 | VISpor | Isocortex | |
| 26 | ACAd | Anterior cingulate area, dorsal part | Isocortex |
| 27 | ACAv | Anterior cingulate area, ventral part | Isocortex |
| 28 | PL | Prelimbic area | Isocortex |
| 29 | ILA | Infralimbic area | Isocortex |
| 30 | ORBl | Orbital area, lateral part | Isocortex |
| 31 | ORBm | Orbital area, medial part | Isocortex |
| 32 | ORBvl | Orbital area, ventrolateral part | Isocortex |
| 33 | AId | Agranular insular area, dorsal part | Isocortex |
| 34 | AIp | Agranular insular area, posterior part | Isocortex |
| 35 | AIv | Agranular insular area, ventral part | Isocortex |
| 36 | RSPagl | Retrosplenial area, lateral agranular part | Isocortex |
| 37 | RSPd | Retrosplenial area, dorsal part | Isocortex |
| 38 | RSPv | Retrosplenial area, ventral part | Isocortex |
| 39 | VISa | Isocortex | |
| 40 | VISrl | Isocortex | |
| 41 | TEa | Temporal association areas | Isocortex |
| 42 | PERI | Perirhinal area | Isocortex |
| 43 | ECT | Ectorhinal area | Isocortex |
| 45 | AOB | Accessory olfactory bulb | Olfactory areas |
| 46 | AON | Anterior olfactory nucleus | Olfactory areas |
| 47 | TT | Taenia tecta | Olfactory areas |
| 48 | DP | Dorsal peduncular area | Olfactory areas |
| 49 | PIR | Piriform area | Olfactory areas |
| 50 | NLOT | Nucleus of the lateral olfactory tract | Olfactory areas |
| 51 | COAa | Cortical amygdalar area, anterior part | Olfactory areas |
| 57 | CA3 | Field CA3 | Hippocampal formation |
| 59 | FC | Fasciola cinerea | Hippocampal formation |
| 60 | IG | Induseum griseum | Hippocampal formation |
| 61 | ENTl | Entorhinal area, lateral part | Hippocampal formation |
| 65 | POST | Postsubiculum | Hippocampal formation |
| 66 | PRE | Presubiculum | Hippocampal formation |
| 67 | SUB | Subiculum | Hippocampal formation |
| 68 | CLA | Claustrum | Claustrum + amygdala |
| 69 | EPd | Endopiriform nucleus, dorsal part | Claustrum + amygdala |
| 70 | EPv | Endopiriform nucleus, ventral part | Claustrum + amygdala |
| 71 | LA | Lateral amygdalar nucleus | Claustrum + amygdala |
| 72 | BLA | Basolateral amygdalar nucleus | Claustrum + amygdala |
| 73 | BMA | Basomedial amygdalar nucleus | Claustrum + amygdala |
| 74 | PA | Posterior amygdalar nucleus | Claustrum + amygdala |
| 75 | CP | Caudoputamen | Striatum + pallidum |
| 76 | ACB | Nucleus accumbens | Striatum + pallidum |
| 77 | FS | Fundus of striatum | Striatum + pallidum |
| 78 | OT | Olfactory tubercle | Striatum + pallidum |
| 79 | LSc | Lateral septal nucleus, caudal (caudodorsal) part | Striatum + pallidum |
| 80 | LSr | Lateral septal nucleus, rostral (rostroventral) part | Striatum + pallidum |
| 83 | SH | Septohippocampal nucleus | Striatum + pallidum |
| 84 | AAA | Anterior amygdalar area | Striatum + pallidum |
| 86 | CEA | Central amygdalar nucleus | Striatum + pallidum |
| 87 | IA | Intercalated amygdalar nucleus | Striatum + pallidum |
| 88 | MEA | Medial amygdalar nucleus | Striatum + pallidum |
| 89 | GPe | Globus pallidus, external segment | Striatum + pallidum |
| 90 | GPi | Globus pallidus, internal segment | Striatum + pallidum |
| 91 | SI | Substantia innominata | Striatum + pallidum |
| 92 | MA | Magnocellular nucleus | Striatum + pallidum |
| 94 | NDB | Diagonal band nucleus | Striatum + pallidum |
| 96 | BST | Bed nuclei of the stria terminalis | Striatum + pallidum |
| 97 | BAC | Bed nucleus of the anterior commissure | Striatum + pallidum |
| 98 | VAL | Ventral anterior-lateral complex of the thalamus | Thalamus |
| 99 | VM | Ventral medial nucleus of the thalamus | Thalamus |
| 100 | VPL | Ventral posterolateral nucleus of the thalamus | Thalamus |
| 101 | VPLpc | Ventral posterolateral nucleus of the thalamus, parvicellular part | Thalamus |
| 102 | VPM | Ventral posteromedial nucleus of the thalamus | Thalamus |
| 103 | VPMpc | Ventral posteromedial nucleus of the thalamus, parvicellular part | Thalamus |
| 104 | SPFm | Subparafascicular nucleus, magnocellular part | Thalamus |
| 105 | SPFp | Subparafascicular nucleus, parvicellular part | Thalamus |
| 106 | SPA | Subparafascicular area | Thalamus |
| 107 | PP | Peripeduncular nucleus | Thalamus |
| 108 | MG | Medial geniculate complex | Thalamus |
| 110 | LP | Lateral posterior nucleus of the thalamus | Thalamus |
| 111 | PO | Posterior complex of the thalamus | Thalamus |
| 112 | POL | Posterior limiting nucleus of the thalamus | Thalamus |
| 113 | SGN | Suprageniculate nucleus | Thalamus |
| 114 | AV | Anteroventral nucleus of thalamus | Thalamus |
| 115 | AM | Anteromedial nucleus | Thalamus |
| 116 | AD | Anterodorsal nucleus | Thalamus |
| 117 | IAM | Interanteromedial nucleus of the thalamus | Thalamus |
| 118 | IAD | Interanterodorsal nucleus of the thalamus | Thalamus |
| 119 | LD | Lateral dorsal nucleus of thalamus | Thalamus |
| 120 | IMD | Intermediodorsal nucleus of the thalamus | Thalamus |
| 121 | MD | Mediodorsal nucleus of thalamus | Thalamus |
| 122 | SMT | Submedial nucleus of the thalamus | Thalamus |
| 123 | PR | Perireunensis nucleus | Thalamus |
| 124 | PVT | Paraventricular nucleus of the thalamus | Thalamus |
| 125 | PT | Parataenial nucleus | Thalamus |
| 126 | RE | Nucleus of reunions | Thalamus |
| 127 | RH | Rhomboid nucleus | Thalamus |
| 128 | CM | Central medial nucleus of the thalamus | Thalamus |
| 129 | PCN | Paracentral nucleus | Thalamus |
| 130 | CL | Central lateral nucleus of the thalamus | Thalamus |
| 131 | PF | Parafascicular nucleus | Thalamus |
| 132 | RT | Reticular nucleus of the thalamus | Thalamus |
| 133 | IGL | Intergeniculate leaflet of the lateral geniculate complex | Thalamus |
| 134 | LGv | Ventral part of the lateral geniculate complex | Thalamus |
| 135 | SubG | Subgeniculate nucleus | Thalamus |
| 137 | LH | Lateral habenula | Thalamus |
| 138 | SO | Supraoptic nucleus | Hypothalamus |
| 140 | PVH | Paraventricular hypothalamic nucleus | Hypothalamus |
| 142 | PVi | Periventricular hypothalamic nucleus, intermediate part | Hypothalamus |
| 145 | AVP | Anteroventral preoptic nucleus | Hypothalamus |
| 147 | DMH | Dorsomedial nucleus of the hypothalamus | Hypothalamus |
| 158 | VLPO | Ventrolateral preoptic nucleus | Hypothalamus |
| 160 | LM | Lateral mammillary nucleus | Hypothalamus |
| 161 | MM | Medial mammillary nucleus | Hypothalamus |
| 162 | SUM | Supramammillary nucleus | Hypothalamus |
| 163 | TMd | Tuberomammillary nucleus, dorsal part | Hypothalamus |
| 164 | TMv | Tuberomammillary nucleus, ventral part | Hypothalamus |
| 166 | PMd | Dorsal premammillary nucleus | Hypothalamus |
| 168 | PVHd | Paraventricular hypothalamic nucleus, descending division | Hypothalamus |
| 170 | PH | Posterior hypothalamic nucleus | Hypothalamus |
| 171 | LHA | Lateral hypothalamic area | Hypothalamus |
| 172 | LPO | Lateral preoptic area | Hypothalamus |
| 173 | PST | Preparasubthalamic nucleus | Hypothalamus |
| 174 | PSTN | Parasubthalamic nucleus | Hypothalamus |
| 176 | STN | Subthalamic nucleus | Hypothalamus |
| 177 | TU | Tuberal nucleus | Hypothalamus |
| 178 | ZI | Zona incerta | Hypothalamus |
| 179 | SCs | Superior colliculus, sensory related | Midbrain + pons |
| 180 | IC | Inferior colliculus | Midbrain + pons |
| 181 | NB | Nucleus of the brachium of the inferior colliculus | Midbrain + pons |
| 182 | SAG | Nucleus sagulum | Midbrain + pons |
| 183 | PBG | Parabigeminal nucleus | Midbrain + pons |
| 184 | MEV | Midbrain trigeminal nucleus | Midbrain + pons |
| 185 | SNr | Substantia nigra, reticular part | Midbrain + pons |
| 186 | VTA | Ventral tegmental area | Midbrain + pons |
| 187 | RR | Midbrain reticular nucleus, retrorubral area | Midbrain + pons |
| 188 | MRN | Midbrain reticular nucleus | Midbrain + pons |
| 189 | SCm | Superior colliculus, motor related | Midbrain + pons |
| 190 | PAG | Periaqueductal gray | Midbrain + pons |
| 191 | APN | Anterior pretectal nucleus | Midbrain + pons |
| 192 | MPT | Medial pretectal area | Midbrain + pons |
| 193 | NOT | Nucleus of the optic tract | Midbrain + pons |
| 194 | NPC | Nucleus of the posterior commissure | Midbrain + pons |
| 195 | OP | Olivary pretectal nucleus | Midbrain + pons |
| 196 | PPT | Posterior pretectal nucleus | Midbrain + pons |
| 197 | CUN | Cuneiform nucleus | Midbrain + pons |
| 198 | RN | Red nucleus | Midbrain + pons |
| 199 | III | Oculomotor nucleus | Midbrain + pons |
| 200 | EW | Edinger–Westphal nucleus | Midbrain + pons |
| 201 | IV | Trochlear nucleus | Midbrain + pons |
| 202 | VTN | Ventral tegmental nucleus | Midbrain + pons |
| 203 | AT | Anterior tegmental nucleus | Midbrain + pons |
| 204 | LT | Lateral terminal nucleus of the accessory optic tract | Midbrain + pons |
| 205 | SNc | Substantia nigra, compact part | Midbrain + pons |
| 206 | PPN | Pedunculopontine nucleus | Midbrain + pons |
| 207 | IF | Interfascicular nucleus raphe | Midbrain + pons |
| 208 | IPN | Interpeduncular nucleus | Midbrain + pons |
| 209 | RL | Rostral linear nucleus raphe | Midbrain + pons |
| 210 | CLI | Central linear nucleus raphe | Midbrain + pons |
| 211 | DR | Dorsal nucleus raphe | Midbrain + pons |
| 212 | NLL | Nucleus of the lateral lemniscus | Midbrain + pons |
| 213 | PSV | Principal sensory nucleus of the trigeminal | Midbrain + pons |
| 214 | PB | Parabrachial nucleus | Midbrain + pons |
| 215 | SOC | Superior olivary complex | Midbrain + pons |
| 216 | B | Barringtons nucleus | Midbrain + pons |
| 217 | DTN | Dorsal tegmental nucleus | Midbrain + pons |
| 218 | PCG | Pontine central gray | Midbrain + pons |
| 219 | PG | Pontine gray | Midbrain + pons |
| 220 | PRNc | Pontine reticular nucleus, caudal part | Midbrain + pons |
| 221 | SG | Supragenual nucleus | Midbrain + pons |
| 222 | SUT | Supratrigeminal nucleus | Midbrain + pons |
| 223 | TRN | Tegmental reticular nucleus | Midbrain + pons |
| 224 | V | Motor nucleus of trigeminal | Midbrain + pons |
| 225 | CS | Superior central nucleus raphe | Midbrain + pons |
| 226 | LC | Locus ceruleus | Midbrain + pons |
| 227 | LDT | Laterodorsal tegmental nucleus | Midbrain + pons |
| 228 | NI | Nucleus incertus | Midbrain + pons |
| 229 | PRNr | Pontine reticular nucleus | Midbrain + pons |
| 230 | RPO | Nucleus raphe pontis | Midbrain + pons |
| 231 | SLC | Subceruleus nucleus | Midbrain + pons |
| 232 | SLD | Sublaterodorsal nucleus | Midbrain + pons |
| 236 | CU | Cuneate nucleus | Medulla |
| 239 | NTB | Nucleus of the trapezoid body | Medulla |
| 240 | NTS | Nucleus of the solitary tract | Medulla |
| 241 | SPVC | Spinal nucleus of the trigeminal, caudal part | Medulla |
| 242 | SPVI | Spinal nucleus of the trigeminal, interpolar part | Medulla |
| 243 | SPVO | Spinal nucleus of the trigeminal, oral part | Medulla |
| 244 | VI | Abducens nucleus | Medulla |
| 245 | VII | Facial motor nucleus | Medulla |
| 246 | ACVII | Accessory facial motor nucleus | Medulla |
| 247 | AMB | Nucleus ambiguus | Medulla |
| 248 | DMX | Dorsal motor nucleus of the vagus nerve | Medulla |
| 249 | GRN | Gigantocellular reticular nucleus | Medulla |
| 250 | ICB | Infracerebellar nucleus | Medulla |
| 251 | IO | Inferior olivary complex | Medulla |
| 252 | IRN | Intermediate reticular nucleus | Medulla |
| 253 | ISN | Inferior salivatory nucleus | Medulla |
| 254 | LIN | Linear nucleus of the medulla | Medulla |
| 255 | LRN | Lateral reticular nucleus | Medulla |
| 256 | MARN | Magnocellular reticular nucleus | Medulla |
| 257 | MDRNd | Medullary reticular nucleus, dorsal part | Medulla |
| 258 | MDRNv | Medullary reticular nucleus, ventral part | Medulla |
| 259 | PARN | Parvicellular reticular nucleus | Medulla |
| 260 | PAS | Parasolitary nucleus | Medulla |
| 261 | PGRNd | Paragigantocellular reticular nucleus, dorsal part | Medulla |
| 262 | PGRNl | Paragigantocellular reticular nucleus, lateral part | Medulla |
| 263 | NR | Nucleus of Roller | Medulla |
| 264 | PRP | Nucleus prepositus | Medulla |
| 265 | PPY | Parapyramidal nucleus | Medulla |
| 266 | LAV | Lateral vestibular nucleus | Medulla |
| 267 | MV | Medial vestibular nucleus | Medulla |
| 268 | SPIV | Spinal vestibular nucleus | Medulla |
| 269 | SUV | Superior vestibular nucleus | Medulla |
| 270 | x | Nucleus x | Medulla |
| 271 | XII | Hypoglossal nucleus | Medulla |
| 272 | y | Nucleus y | Medulla |
| 273 | RM | Nucleus raphe magnus | Medulla |
| 274 | RPA | Nucleus raphe pallidus | Medulla |
| 275 | RO | Nucleus raphe obscurus | Medulla |
| 290 | FN | Fastigial nucleus | Cerebellum |
| 291 | IP | Interposed nucleus | Cerebellum |
| 292 | DN | Dentate nucleus | Cerebellum |
| 293 | fiber tracts | Fiber tracts | Fiber tracts |