Astr-enriched genes in V-SVZ + SGZ | NSC-enriched genes in V-SVZ + SGZ |
---|---|
Gpr37l1 | Dbi |
Sparcl1 | Sfrp1 |
Cxcl14* | Rpl41 |
Htra1 | Rplp0 |
Bcan | Rps27a |
Id2 | Rpl18a |
Aqp4* | Rps27 |
Tril* | Rpl35a |
Ntsr2 | Rps19 |
Atp1b2 | Rpl13a |
Timp4* | Rpl9 |
Car2* | Rpl3 |
Atp1a2 | Rps14 |
Eno1 | Eef1a1 |
Kcnk1 | Rpl13 |
S100b* | Rplp1 |
Dbx2 | Ptma |
Cldn10 | Rps4x |
Btbd17 | Rpl10 |
Aplp1 | Marcksl1 |
Slc39a12* | Rpl23a |
Msmo1 | Rps24 |
Gja1 | Rpl17 |
Slc7a10 | Rps5 |
Lsamp | Rpl14 |
Pla2g7 | Vim |
Fjx1 | Rps9 |
Gria2 | Rps23 |
Plpp3 | Rps15a |
Abhd3* | Rps18 |
F3 | Rpl37 |
Gpm6a | Rpl11 |
Dclk1 | Rpl27a |
Clu | Rps16 |
Gjb6* | Rps8 |
Slc4a4* | Rpl26 |
Tmem100 | Rpl37a |
Omg* | Rps13 |
Ntm | Rps10 |
Eva1a | Gnas |
Grina | Rps20 |
Scg3 | Rpl32 |
Arxes2* | Rplp2 |
S1pr1 | Rpl8 |
Apoe | Rps2 |
Smpdl3a | Rpl34 |
Camk2n1 | Rpl38 |
mt-Co3 | Rps21 |
Acsbg1 | Rps25 |
Agpat5 | Rpl23 |
Acsl6 | Rps12 |
Gpc5 | Riiad1 |
Hacd2 | Rps3a1 |
Cadm1 | Rpl7 |
Fgfr3* | Sparc |
Aldoc | Rpl10a |
Hapln1* | Rps6 |
Mfge8 | Rpl22l1 |
Hbegf | Rps15 |
Tuba4a | Rps28 |
Hsd11b1* | H2afv |
Grin2c* | Rps7 |
Tmem176a | Rps11 |
Grm3 | Rtn1 |
Chst1 | Fau |
Slc38a3 | Rpl21 |
Tspan7 | Rpl31 |
Macf.1 | Rpl39 |
Sepp1 | Ftl1 |
Lcat* | Rps17 |
Clmn | Tmsb4x |
Vegfa* | Hmgb1 |
AI464131* | Rpl30 |
Slc6a1 | Rpsa |
Pfkp* | Hsp90aa1 |
Paqr7 | Ccnd2 |
Eps8 | Rpl6 |
Slc9a3r1 | Rps3 |
Tagln3 | Ascl1 |
Fermt2 | Tpt1 |
mt-Nd1 | Rpl36a |
Oaf | Fxyd6 |
Vcam1 | Rpl15 |
Tlcd1 | Rpl36 |
Tmem176b | Fabp7 |
mt-Atp6 | Rpl19 |
mt-Cytb | Rpl4 |
mt-Nd2 | Bex4 |
Cryab* | Hmgn1 |
Serinc1 | Cd9 |
Cd81 | Rpl18 |
Phyhipl | Rpl24 |
Ptprz1 | Pebp1 |
Ppp1r3g | Psph |
Syne1* | Rps26 |
Cd38* | Ypel3 |
Mertk | Cnbp |
Appl2 | Rpl12 |
Mt1 | Rpl22 |
Mfsd2a | Swi5 |
Ank2 | Zbtb20 |
Fam20a | Ybx1 |
Tprkb | Sptssa |
Sept7. | Eef2 |
Pcdh7 | Tox3 |
Scrg1 | Slc38a1 |
Tmed5 | Rpl35 |
Ccdc88a | Naca |
Ugp2 | Ywhae |
mt-Nd4 | Plagl1 |
Cadm2* | Rpl29 |
mt-Co2 | Sept15. |
Ptn | Smim11 |
Mt2 | Arl4c |
Pmm1 | Rpl5 |
Il18 | Fbln2 |
mt-Co1 | Bex2 |
2900052N01Rik | H3f3a |
Apln | Rpl27 |
Luzp2 | Mif |
Slc6a11 | Maged1 |
Slco1c1 | Marcks |
Rgcc | Mrfap1 |
Ncan | Snrpg |
Slc1a3 | Mfap2 |
Id3 | Rpl7a |
Acsl3 | Snrpd2 |
Phactr3 | Veph1 |
Serpine2 | Tuba1a |
P4 ha1 | Chchd2 |
Tmem44 | Ppia |
Agt* | Tomm7 |
Enho | Jund |
Adora2b | Ubl5 |
Hacd3 | Acot1 |
Tsc22d4 | H1f0 |
Cdh10 | Anapc11 |
Dhcr7 | Btf3 |
Gabrg1* | Hdgf |
Ctsd | Pfdn5 |
Cystm1 | Gnb2l1 |
Phkg1 | Trim2 |
Slc7a11 | Tead2 |
Usp53 | Psip1 |
Pcdh10 | Ifitm2 |
Arhgap5 | Pdlim4 |
Sec14l2 | Ap1s2 |
Nptn | Rcn1 |
Thy1 | Eif3f |
Cmtm5 | Rpl28 |
Atp13a4 | Cetn2 |
Elovl2 | Clic1 |
Rorb | Ndn |
Fut9 | Nenf |
Sat1 | Snrpe |
Pcdh9 | Gabarap |
Ttyh1 | Dek |
mt-Nd4l | Prdx2 |
Pfkm | Eef1d |
Gabrb1 | Idh2 |
Fam21 | Stra13 |
Cpeb4 | Sh3bgrl3 |
Prex1 | Atpif1 |
Pmp22 | Srp9 |
Gatm | Nsg1 |
Csrp1 | Hsbp1 |
Smpd1 | Eef1g |
Cyp7b1 | Serf1 |
Pcdh17 | Myl9 |
Tlr3 | Fam210b |
Metrn | Aif1l |
Lgr4 | Cox7a2l |
Chchd10 | Bex1 |
Slc14a1 | Dstn |
Rrbp1 | Tuba1b |
Gpr162 | Rps27l |
Abcd2 | Ap2m1 |
Gpr37 | Stmn3 |
Slitrk2 | Ahsa1 |
Elovl5 | Ptx3 |
Emc3 | Trmt112 |
Tnik | Hmgn2 |
Saraf | Eef1b2 |
Cntfr | Creb5 |
Aco2 | Sf3b2 |
Ubc | Cfdp1 |
Chst10 | Tspan13 |
Plcd4 | Park7 |
Hmgcr | Ei24 |
Tmem229a | Sec61g |
Gstm5 | Fkbp3 |
Wscd1 | Tmem107 |
Gpi1 | Tbca |
Stt3b | Snrpf |
Hepacam | Anp32b |
Cd47 | Atp5e |
Ednrb | Nudc |
Mdga2 | Psmg4 |
Cyp2j6 | Pkig |
Akt2 | Sumo2 |
Pgm2 | Erh |
Nebl | Hcf.c1r1 |
Olig1 | 2810459M11Rik |
Mfn1 | Tmem258 |
Ddhd1 | Pfdn2 |
Trp53bp2 | Maf1 |
Rapgef3 | Bnip3l |
Crot | Akr1a1 |
Adk | Rpa2 |
Rasa2 | Rhcg |
Ckb | Kif21a |
Rnf13 | Oaz1 |
Slc20a1 | Sumo3 |
Dner | 2700094K13Rik |
Slc27a1 | H2afy |
Irak2 | St13 |
mt-Nd3 | Cetn3 |
Osbpl1a | Hbb-bs |
Cst3 | Hint1 |
Chst2 | Efnb1 |
Nrcam | Tubb5 |
Tpp1 | Fos |
Fgf1 | Sfr1 |
Clptm1 | Eif1ax |
Tmem189 | Nedd8 |
Capn2 | Cdc26 |
Daam2 | Elof1 |
Ndp | Hsp90ab1 |
Dmd | Ptov1 |
Slc1a4 | Hnrnpc |
Hadhb | Rnaseh2c |
Nr1d1 | Txn1 |
Baalc | Rnf187 |
Psd2 | Psme1 |
Aldh1l1 | Ngfrap1 |
Hist1 h1c | Fam32a |
Itga6 | Nop10 |
Cyp2d22 | Pbx1 |
Aldoa | Eif3h |
Laptm4b | Gltscr2 |
Cnp | Tmpo |
Kifc3 | Efnb3 |
Pcdh1 | Aprt |
Dnajb9 | Psme2 |
Asah1 | Mettl9 |
Mfap3l | Hmgb2 |
Camk2g | Rlbp1 |
Cpq | Slit2 |
Tank | Use1 |
Gpr146 | Hsd17b10 |
Pnkd | Hspe1 |
Mgll | Pter |
Arhgef26 | Cnpy2 |
Aifm3 | Hnrnpf |
Slc2a1 | Btg2 |
Slc41a1 | Ywhaq |
Fam213a | Psenen |
Igsf11 | Bri3 |
Fgfrl1 | Wbp5 |
Adgrl3 | Gsta4 |
Etv5 | Trip6 |
RP23-4H17.3 | Mdk |
Fut8 | Mrpl52 |
Jam2 | Rac3 |
Kif1b | Ran |
Usp54 | Eif3i |
Sash1 | Tma7 |
Tmbim1 | G3bp1 |
Vcl | Pax6 |
Ppp3ca | Npm1 |
Pon2 | Chchd7 |
Phka1 | Fkbp4 |
Chpt1 | Ccdc80 |
Mir124-2 hg | Mbd3 |
Abi1 | Hnrnpr |
Uqcr10 | Myl6 |
Stxbp3 | Set |
Ppp1r1b | Ranbp1 |
Prex2 | Golim4 |
mt-Nd5 | Gpx8 |
Acss2 | Arl3 |
Tmx2 | Bag2 |
Pid1 | Ntan1 |
Tcn2 | Med28 |
Tfrc | Ddah2 |
Dio2 | Nhp2l1 |
Trib2 | Stk11 |
Slc15a2 | Gpx1 |
Itpr2 | Tsn |
Gm2a | Basp1 |
Npas3 | Msn |
Pttg1ip | Cers4 |
Acap2 | Unc119 |
Insig1 | Paip2 |
Csgalnact1 | Srp14 |
Mcur1 | Ift22 |
Uqcr11 | Anapc5 |
S100a13 | Hnrnpa1 |
Retsat | Cnn3 |
Tmem47 | Sumo1 |
Adgrg1 | Gm8730 |
Anp32a | |
Tceb2 | |
Myl12a | |
Cacybp | |
Emg1 | |
Ssrp1 | |
Polr3h | |
Nfix | |
Puf60 | |
Ppp1ca | |
Rpl23a-ps3 | |
Romo1 | |
Cfap20 | |
Gm17750 | |
Vgll4 |
Shown are genes that are differentially expressed (FWER < 0.05) between NSCs and astrocytes in both the dentate gyrus and the V-SVZ. Genes identified as differentially expressed by V-SVZ NSCs versus astrocytes in Borrett et al. (2020) were interrogated for their expression in all SGZ NSCs (red cells in Fig. 1B) and all SGZ astrocytes (green and blue cells in Fig. 1B) in the combined dentate gyrus dataset. The left column indicates genes significantly enriched in astrocytes in both the V-SVZ and SGZ, and the right column indicates genes significantly enriched in NSCs in both the V-SVZ and SGZ. Of the astrocyte-enriched genes, 26 (indicated with asterisks in the table) were highly enriched relative to NSCs, and were used to define a shared forebrain niche astrocyte signature as shown in Figures 1G, 2E.