Summary of off-target analysis
sgRNA72 crRNA TCCTGGAGATGCTCCTCAAA | |||||
---|---|---|---|---|---|
Genomic DNA | Chr | Position | Mismatches | Locus | Off-target effect |
TCCTGGAGATGCTCCTCAAA|TGG | chr2 | 66299689 | 0 | Scn1a | N/A |
TCCTGGAaATGCTCCTCAAA|TGG | chr2 | 65482216 | 1 | Scn3a | No |
TtCTGGAGATGCTtCTCAAg|TGG | chr2 | 66689597 | 3 | Scn7a | No |
TtCTGGAGATGCTCCTCAtt|CGG | chr2 | 102858300 | 3 | Cd44 | No |
N/A, not applicable. Results of Cas-OFFinder analysis of sgRNA72 targets on mouse chromosome 2. The intended target for sgRNA72 is within Scn1a, shown in green. The location of each of the three potential off-target sites on mouse chromosome 2 identified by Cas-OFFinder is shown. The mismatches are indicated by lower case bold letters. The underlined region indicates the 10-nucleotide seed region proximal to the PAM site. The vertical line at the 3′ end of each target or off-target site indicates the boundary between the gRNA target and the adjacent Cas9 PAM (NGG) sequence. No off-target effects were found when Scn1a K1270T WT and heterozygous mouse DNA was amplified using specific primers (shown in Extended Data Table 1-1) and sequences were analyzed (Extended Data Fig. 1-1).