TY - JOUR T1 - Molecular Diversity of Glutamatergic and GABAergic Synapses from Multiplexed Fluorescence Imaging JF - eneuro JO - eNeuro DO - 10.1523/ENEURO.0286-20.2020 VL - 8 IS - 1 SP - ENEURO.0286-20.2020 AU - Eric Danielson AU - Karen Perez de Arce AU - Beth Cimini AU - Eike-Christian Wamhoff AU - Shantanu Singh AU - Jeffrey R. Cottrell AU - Anne E. Carpenter AU - Mark Bathe Y1 - 2021/01/01 UR - http://www.eneuro.org/content/8/1/ENEURO.0286-20.2020.abstract N2 - Neuronal synapses contain hundreds of different protein species important for regulating signal transmission. Characterizing differential expression profiles of proteins within synapses in distinct regions of the brain has revealed a high degree of synaptic diversity defined by unique molecular organization. Multiplexed imaging of in vitro rat primary hippocampal culture models at single synapse resolution offers new opportunities for exploring synaptic reorganization in response to chemical and genetic perturbations. Here, we combine 12-color multiplexed fluorescence imaging with quantitative image analysis and machine learning to identify novel synaptic subtypes within excitatory and inhibitory synapses based on the expression profiles of major synaptic components. We characterize differences in the correlated expression of proteins within these subtypes and we examine how the distribution of these synapses is modified following induction of synaptic plasticity. Under chronic suppression of neuronal activity, phenotypic characterization revealed coordinated increases in both excitatory and inhibitory protein levels without changes in the distribution of synaptic subtypes, suggesting concerted events targeting glutamatergic and GABAergic synapses. Our results offer molecular insight into the mechanisms of synaptic plasticity. ER -