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Research ArticleOpen Source Tools and Methods, Novel Tools and Methods

FASTMAP: Open-Source Flexible Atlas Segmentation Tool for Multi-Area Processing of Biological Images

Dylan J. Terstege, Daniela O. Oboh and Jonathan R. Epp
eNeuro 28 February 2022, 9 (2) ENEURO.0325-21.2022; https://doi.org/10.1523/ENEURO.0325-21.2022
Dylan J. Terstege
Department of Cell Biology and Anatomy, Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada
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Daniela O. Oboh
Department of Cell Biology and Anatomy, Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada
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Jonathan R. Epp
Department of Cell Biology and Anatomy, Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada
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Article Information

DOI 
https://doi.org/10.1523/ENEURO.0325-21.2022
PubMed 
35228311
Published By 
Society for Neuroscience
History 
  • Received August 3, 2021
  • Revision received February 4, 2022
  • Accepted February 14, 2022
  • Published online February 28, 2022.
Copyright & Usage 
Copyright © 2022 Terstege et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

Author Information

  1. Dylan J. Terstege,
  2. Daniela O. Oboh and
  3. Jonathan R. Epp
  1. Department of Cell Biology and Anatomy, Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada
  1. Correspondence should be addressed to Jonathan R. Epp at jonathan.epp1{at}ucalgary.ca.
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Author contributions

  1. Author contributions: D.J.T. and J.R.E. designed research; D.J.T. and D.O.O. performed research; D.J.T., D.O.O., and J.R.E. analyzed data; D.J.T. and J.R.E. wrote the paper.

Disclosures

  • The authors declare no competing financial interests.

  • This work was supported by The Brain Canada Foundation/The Azrieli Foundation Early Career Capacity Building Grant 4709 and the Natural Sciences and Engineering Research Council of Canada Discovery Grant RGPIN-2018-05135 (to J.R.E.). This work was supported in part by funding provided to D.J.T. by Brain Canada, in partnership with Health Canada, for the Canadian Open Neuroscience Platform Initiative (CONP-RSA2021-10). D.O.O. received studentship funding through the University of Calgary Program for Undergraduate Research Experience (PURE).

Funding

  • Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (NSERC)

    RGPIN-2018-05135
  • Fondation Brain Canada (Brain Canada)

    4709
  • Canadian Open Neuroscience Platform

    CONP-RSA2021-10
  • Program for Undergraduate ResearchExperience (PURE)

Other Version

  • You are viewing the most recent version of this article.
  • previous version (February 28, 2022).

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Feb 202226014
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Total106466601794
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eneuro: 9 (2)
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March/April 2022
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FASTMAP: Open-Source Flexible Atlas Segmentation Tool for Multi-Area Processing of Biological Images
Dylan J. Terstege, Daniela O. Oboh, Jonathan R. Epp
eNeuro 28 February 2022, 9 (2) ENEURO.0325-21.2022; DOI: 10.1523/ENEURO.0325-21.2022

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FASTMAP: Open-Source Flexible Atlas Segmentation Tool for Multi-Area Processing of Biological Images
Dylan J. Terstege, Daniela O. Oboh, Jonathan R. Epp
eNeuro 28 February 2022, 9 (2) ENEURO.0325-21.2022; DOI: 10.1523/ENEURO.0325-21.2022
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Keywords

  • atlas registration
  • brain mapping
  • open source

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