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Research ArticleResearch Article: New Research, Sensory and Motor Systems

Measuring Stimulus-Evoked Neurophysiological Differentiation in Distinct Populations of Neurons in Mouse Visual Cortex

William G. P. Mayner, William Marshall, Yazan N. Billeh, Saurabh R. Gandhi, Shiella Caldejon, Andrew Cho, Fiona Griffin, Nicole Hancock, Sophie Lambert, Eric K. Lee, Jennifer A. Luviano, Kyla Mace, Chelsea Nayan, Thuyanh V. Nguyen, Kat North, Sam Seid, Ali Williford, Chiara Cirelli, Peter A. Groblewski, Jerome Lecoq, Giulio Tononi, Christof Koch and Anton Arkhipov
eNeuro 12 January 2022, 9 (1) ENEURO.0280-21.2021; https://doi.org/10.1523/ENEURO.0280-21.2021
William G. P. Mayner
1Neuroscience Training Program, University of Wisconsin–Madison, Madison, WI 53705
2Department of Psychiatry, University of Wisconsin–Madison, Madison, WI 53719
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William Marshall
2Department of Psychiatry, University of Wisconsin–Madison, Madison, WI 53719
3Department of Mathematics and Statistics, Brock University, St. Catharines, Ontario L2S 3A1, Canada
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Yazan N. Billeh
4Allen Institute, Seattle, WA 98109
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Saurabh R. Gandhi
4Allen Institute, Seattle, WA 98109
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Shiella Caldejon
4Allen Institute, Seattle, WA 98109
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Andrew Cho
4Allen Institute, Seattle, WA 98109
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Fiona Griffin
4Allen Institute, Seattle, WA 98109
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Nicole Hancock
4Allen Institute, Seattle, WA 98109
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Sophie Lambert
4Allen Institute, Seattle, WA 98109
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Eric K. Lee
4Allen Institute, Seattle, WA 98109
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Jennifer A. Luviano
4Allen Institute, Seattle, WA 98109
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Kyla Mace
4Allen Institute, Seattle, WA 98109
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Chelsea Nayan
4Allen Institute, Seattle, WA 98109
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Thuyanh V. Nguyen
4Allen Institute, Seattle, WA 98109
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Kat North
4Allen Institute, Seattle, WA 98109
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Sam Seid
4Allen Institute, Seattle, WA 98109
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Ali Williford
4Allen Institute, Seattle, WA 98109
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Chiara Cirelli
2Department of Psychiatry, University of Wisconsin–Madison, Madison, WI 53719
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Peter A. Groblewski
4Allen Institute, Seattle, WA 98109
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Jerome Lecoq
4Allen Institute, Seattle, WA 98109
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Giulio Tononi
2Department of Psychiatry, University of Wisconsin–Madison, Madison, WI 53719
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Christof Koch
4Allen Institute, Seattle, WA 98109
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Anton Arkhipov
4Allen Institute, Seattle, WA 98109
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Abstract

Despite significant progress in understanding neural coding, it remains unclear how the coordinated activity of large populations of neurons relates to what an observer actually perceives. Since neurophysiological differences must underlie differences among percepts, differentiation analysis—quantifying distinct patterns of neurophysiological activity—has been proposed as an “inside-out” approach that addresses this question. This methodology contrasts with “outside-in” approaches such as feature tuning and decoding analyses, which are defined in terms of extrinsic experimental variables. Here, we used two-photon calcium imaging in mice of both sexes to systematically survey stimulus-evoked neurophysiological differentiation (ND) in excitatory neuronal populations in layers (L)2/3, L4, and L5 across five visual cortical areas (primary, lateromedial, anterolateral, posteromedial, and anteromedial) in response to naturalistic and phase-scrambled movie stimuli. We find that unscrambled stimuli evoke greater ND than scrambled stimuli specifically in L2/3 of the anterolateral and anteromedial areas, and that this effect is modulated by arousal state and locomotion. By contrast, decoding performance was far above chance and did not vary substantially across areas and layers. Differentiation also differed within the unscrambled stimulus set, suggesting that differentiation analysis may be used to probe the ethological relevance of individual stimuli.

  • calcium imaging
  • differentiation analysis
  • perception
  • population coding

Footnotes

  • The authors declare no competing financial interests.

  • The data presented here were obtained at the Allen Brain Observatory as part of the OpenScope project, which is operated by the Allen Institute. This work was supported by the Allen Institute, the Tiny Blue Dot Foundation, and in part by the Falconwood Foundation. W.M. was supported by the Natural Sciences and Engineering Research Council of Canada Grant RGPIN-2019-05418.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

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Measuring Stimulus-Evoked Neurophysiological Differentiation in Distinct Populations of Neurons in Mouse Visual Cortex
William G. P. Mayner, William Marshall, Yazan N. Billeh, Saurabh R. Gandhi, Shiella Caldejon, Andrew Cho, Fiona Griffin, Nicole Hancock, Sophie Lambert, Eric K. Lee, Jennifer A. Luviano, Kyla Mace, Chelsea Nayan, Thuyanh V. Nguyen, Kat North, Sam Seid, Ali Williford, Chiara Cirelli, Peter A. Groblewski, Jerome Lecoq, Giulio Tononi, Christof Koch, Anton Arkhipov
eNeuro 12 January 2022, 9 (1) ENEURO.0280-21.2021; DOI: 10.1523/ENEURO.0280-21.2021

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Measuring Stimulus-Evoked Neurophysiological Differentiation in Distinct Populations of Neurons in Mouse Visual Cortex
William G. P. Mayner, William Marshall, Yazan N. Billeh, Saurabh R. Gandhi, Shiella Caldejon, Andrew Cho, Fiona Griffin, Nicole Hancock, Sophie Lambert, Eric K. Lee, Jennifer A. Luviano, Kyla Mace, Chelsea Nayan, Thuyanh V. Nguyen, Kat North, Sam Seid, Ali Williford, Chiara Cirelli, Peter A. Groblewski, Jerome Lecoq, Giulio Tononi, Christof Koch, Anton Arkhipov
eNeuro 12 January 2022, 9 (1) ENEURO.0280-21.2021; DOI: 10.1523/ENEURO.0280-21.2021
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Keywords

  • calcium imaging
  • differentiation analysis
  • perception
  • population coding

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