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Research ArticleOpen Source Tools and Methods, Novel Tools and Methods

RapID Cell Counter: Semi-Automated and Mid-Throughput Estimation of Cell Density within Diverse Cortical Layers

Aarthi Sekar, Thiago M. Sanches, Keiko Hino, Matangi Kumar, Juliann Wang, Elisa Ha, Blythe Durbin-Johnson, Sergi Simó and Megan Y. Dennis
eNeuro 1 November 2021, 8 (6) ENEURO.0185-21.2021; https://doi.org/10.1523/ENEURO.0185-21.2021
Aarthi Sekar
1Integrated Genetics and Genomics Graduate Group, University of California, Davis, CA, 95616
2Department of Biochemistry and Molecular Medicine, MIND Institute, University of California, Davis, CA, 95616
3Genome Center, University of California, Davis, CA, 95616
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Thiago M. Sanches
1Integrated Genetics and Genomics Graduate Group, University of California, Davis, CA, 95616
4Department of Animal Sciences, University of California, Davis, CA, 95616
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Keiko Hino
5Department of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616
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Matangi Kumar
3Genome Center, University of California, Davis, CA, 95616
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Juliann Wang
3Genome Center, University of California, Davis, CA, 95616
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Elisa Ha
3Genome Center, University of California, Davis, CA, 95616
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Blythe Durbin-Johnson
6Department of Public Health Sciences, University of California, Davis, CA, 95616
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Sergi Simó
5Department of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616
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Megan Y. Dennis
1Integrated Genetics and Genomics Graduate Group, University of California, Davis, CA, 95616
2Department of Biochemistry and Molecular Medicine, MIND Institute, University of California, Davis, CA, 95616
3Genome Center, University of California, Davis, CA, 95616
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eneuro: 8 (6)
eNeuro
Vol. 8, Issue 6
November/December 2021
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RapID Cell Counter: Semi-Automated and Mid-Throughput Estimation of Cell Density within Diverse Cortical Layers
Aarthi Sekar, Thiago M. Sanches, Keiko Hino, Matangi Kumar, Juliann Wang, Elisa Ha, Blythe Durbin-Johnson, Sergi Simó, Megan Y. Dennis
eNeuro 1 November 2021, 8 (6) ENEURO.0185-21.2021; DOI: 10.1523/ENEURO.0185-21.2021

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RapID Cell Counter: Semi-Automated and Mid-Throughput Estimation of Cell Density within Diverse Cortical Layers
Aarthi Sekar, Thiago M. Sanches, Keiko Hino, Matangi Kumar, Juliann Wang, Elisa Ha, Blythe Durbin-Johnson, Sergi Simó, Megan Y. Dennis
eNeuro 1 November 2021, 8 (6) ENEURO.0185-21.2021; DOI: 10.1523/ENEURO.0185-21.2021
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Keywords

  • Automated
  • brain imaging
  • cell quantification
  • fluorescence
  • microscopy

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