Skip to main content

Main menu

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Blog
    • Collections
    • Podcast
  • TOPICS
    • Cognition and Behavior
    • Development
    • Disorders of the Nervous System
    • History, Teaching and Public Awareness
    • Integrative Systems
    • Neuronal Excitability
    • Novel Tools and Methods
    • Sensory and Motor Systems
  • ALERTS
  • FOR AUTHORS
  • ABOUT
    • Overview
    • Editorial Board
    • For the Media
    • Privacy Policy
    • Contact Us
    • Feedback
  • SUBMIT

User menu

Search

  • Advanced search
eNeuro

eNeuro

Advanced Search

 

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Blog
    • Collections
    • Podcast
  • TOPICS
    • Cognition and Behavior
    • Development
    • Disorders of the Nervous System
    • History, Teaching and Public Awareness
    • Integrative Systems
    • Neuronal Excitability
    • Novel Tools and Methods
    • Sensory and Motor Systems
  • ALERTS
  • FOR AUTHORS
  • ABOUT
    • Overview
    • Editorial Board
    • For the Media
    • Privacy Policy
    • Contact Us
    • Feedback
  • SUBMIT
PreviousNext
Research ArticleOpen Source Tools and Methods, Novel Tools and Methods

DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization

Julien Denis, Robin F. Dard, Eleonora Quiroli, Rosa Cossart and Michel A. Picardo
eNeuro 22 July 2020, 7 (4) ENEURO.0038-20.2020; DOI: https://doi.org/10.1523/ENEURO.0038-20.2020
Julien Denis
Aix Marseille Univ, INSERM, INMED, Marseille 13273, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Robin F. Dard
Aix Marseille Univ, INSERM, INMED, Marseille 13273, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Eleonora Quiroli
Aix Marseille Univ, INSERM, INMED, Marseille 13273, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Rosa Cossart
Aix Marseille Univ, INSERM, INMED, Marseille 13273, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Michel A. Picardo
Aix Marseille Univ, INSERM, INMED, Marseille 13273, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • Article
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF
Loading

Article Information

DOI 
https://doi.org/10.1523/ENEURO.0038-20.2020
PubMed 
32699072
Published By 
Society for Neuroscience
History 
  • Received February 3, 2020
  • Revision received July 6, 2020
  • Accepted July 10, 2020
  • Published online July 22, 2020.
Copyright & Usage 
Copyright © 2020 Denis et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

Author Information

  1. Julien Denis*,
  2. Robin F. Dard*,
  3. Eleonora Quiroli,
  4. Rosa Cossart and
  5. Michel A. Picardo
  1. Aix Marseille Univ, INSERM, INMED, Marseille 13273, France
  1. Correspondence should be addressed to Julien Denis at julien.denis{at}inserm.fr.
View Full Text

Author contributions

  1. Author contributions: J.D., R.F.D., R.C., and M.A.P. Designed Research; R.F.D. and J.D. Performed Research; J.D. Wrote code; M.P., J.D., R.F.D., and E.Q., Labeled data; R.F.D., J.D., M.A.P., and R.C. Wrote the paper.

  2. ↵*J.D. and R.F.D. contributed equally to this work.

Disclosures

  • The authors declare no competing financial interests.

  • This work was supported by the European Research Council under the European Union’s FP7 and Horizon 2020 research and innovation program Grants 242842 and 646925. J.D. was supported by the Fondation pour la Recherche Médicale Grant FDM20170638339. M.P was supported by the Fondation pour la Recherche Médicale Grant ARF20160936186.

Other Version

  • You are viewing the most recent version of this article.
  • previous version (July 22, 2020).

Online Impact

 

Article usage

Select a custom date range for the past year
E.g., 2023-02-05
to
E.g., 2023-02-05

Article usage: July 2020 to February 2023

AbstractFullPdf
Jul 20203630105
Aug 2020203216133
Sep 202071269100
Oct 20204813552
Nov 20203919535
Dec 20202918154
Total 2020753996479
Jan 20211612220
Feb 20211412022
Mar 20212317145
Apr 20211916630
May 2021717036
Jun 20211115325
Jul 2021618960
Aug 20211313933
Sep 2021416645
Oct 2021718475
Nov 2021316780
Dec 2021512533
Total 20211281872504
Jan 2022412149
Feb 2022813247
Mar 2022712943
Apr 202299537
May 2022613038
Jun 202249940
Jul 202256720
Aug 202246721
Sep 202248028
Oct 202259428
Nov 20221310636
Dec 202235819
Total 2022721178406
Jan 202338321
Feb 20230120
Total 202339521
Total95641411410
Back to top

In this issue

eneuro: 7 (4)
eNeuro
Vol. 7, Issue 4
July/August 2020
  • Table of Contents
  • Index by author
  • Ed Board (PDF)
Email

Thank you for sharing this eNeuro article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization
(Your Name) has forwarded a page to you from eNeuro
(Your Name) thought you would be interested in this article in eNeuro.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Print
View Full Page PDF
Citation Tools
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization
Julien Denis, Robin F. Dard, Eleonora Quiroli, Rosa Cossart, Michel A. Picardo
eNeuro 22 July 2020, 7 (4) ENEURO.0038-20.2020; DOI: 10.1523/ENEURO.0038-20.2020

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Respond to this article
Share
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization
Julien Denis, Robin F. Dard, Eleonora Quiroli, Rosa Cossart, Michel A. Picardo
eNeuro 22 July 2020, 7 (4) ENEURO.0038-20.2020; DOI: 10.1523/ENEURO.0038-20.2020
del.icio.us logo Digg logo Reddit logo Twitter logo Facebook logo Google logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Jump to section

  • Article
    • Abstract
    • Significance Statement
    • Introduction
    • Materials and Methods
    • Results
    • Discussion
    • Conclusion
    • Acknowledgments
    • Footnotes
    • References
    • Synthesis
    • Author Response
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF

Keywords

  • calcium imaging
  • CNN
  • deep learning
  • hippocampus
  • LSTM
  • Neuronal activity

Responses to this article

Respond to this article

Jump to comment:

No eLetters have been published for this article.

Related Articles

Cited By...

More in this TOC Section

Open Source Tools and Methods

  • Development of an Open Face Home Cage Running Wheel for Testing Activity-Based Anorexia and Other Applications
  • Simple and Efficient 3D-Printed Superfusion Chamber for Electrophysiological and Neuroimaging Recordings In Vivo
  • Decreased Dorsomedial Striatum Direct Pathway Neuronal Activity Is Required for Learned Motor Coordination
Show more Open Source Tools and Methods

Novel Tools and Methods

  • Multimodal Brain Signal Complexity Predicts Human Intelligence
  • Photothrombotic Middle Cerebral Artery Occlusion in mice: a novel model of ischemic stroke
  • Water-Reaching Platform for Longitudinal Assessment of Cortical Activity and Fine Motor Coordination Defects in a Huntington Disease Mouse Model
Show more Novel Tools and Methods

Subjects

  • Novel Tools and Methods
  • Open Source Tools and Methods

  • Home
  • Alerts
  • Visit Society for Neuroscience on Facebook
  • Follow Society for Neuroscience on Twitter
  • Follow Society for Neuroscience on LinkedIn
  • Visit Society for Neuroscience on Youtube
  • Follow our RSS feeds

Content

  • Early Release
  • Current Issue
  • Latest Articles
  • Issue Archive
  • Blog
  • Browse by Topic

Information

  • For Authors
  • For the Media

About

  • About the Journal
  • Editorial Board
  • Privacy Policy
  • Contact
  • Feedback
(eNeuro logo)
(SfN logo)

Copyright © 2023 by the Society for Neuroscience.
eNeuro eISSN: 2373-2822

The ideas and opinions expressed in eNeuro do not necessarily reflect those of SfN or the eNeuro Editorial Board. Publication of an advertisement or other product mention in eNeuro should not be construed as an endorsement of the manufacturer’s claims. SfN does not assume any responsibility for any injury and/or damage to persons or property arising from or related to any use of any material contained in eNeuro.