Skip to main content

Main menu

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Blog
    • Collections
    • Podcast
  • TOPICS
    • Cognition and Behavior
    • Development
    • Disorders of the Nervous System
    • History, Teaching and Public Awareness
    • Integrative Systems
    • Neuronal Excitability
    • Novel Tools and Methods
    • Sensory and Motor Systems
  • ALERTS
  • FOR AUTHORS
  • ABOUT
    • Overview
    • Editorial Board
    • For the Media
    • Privacy Policy
    • Contact Us
    • Feedback
  • SUBMIT

User menu

Search

  • Advanced search
eNeuro
eNeuro

Advanced Search

 

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Blog
    • Collections
    • Podcast
  • TOPICS
    • Cognition and Behavior
    • Development
    • Disorders of the Nervous System
    • History, Teaching and Public Awareness
    • Integrative Systems
    • Neuronal Excitability
    • Novel Tools and Methods
    • Sensory and Motor Systems
  • ALERTS
  • FOR AUTHORS
  • ABOUT
    • Overview
    • Editorial Board
    • For the Media
    • Privacy Policy
    • Contact Us
    • Feedback
  • SUBMIT
PreviousNext
Research ArticleOpen Source Tools and Methods, Novel Tools and Methods

neurotic: Neuroscience Tool for Interactive Characterization

Jeffrey P. Gill, Samuel Garcia, Lena H. Ting, Mengnan Wu and Hillel J. Chiel
eNeuro 24 April 2020, 7 (3) ENEURO.0085-20.2020; https://doi.org/10.1523/ENEURO.0085-20.2020
Jeffrey P. Gill
1Department of Biology, Case Western Reserve University, Cleveland, OH 44106-7080
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jeffrey P. Gill
Samuel Garcia
2Centre de Recherche en Neuroscience de Lyon, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5292– Institut National de la Santé et de la Recherche Médicale U1028–Université Claude Bernard Lyon 1, Lyon, 69675 Bron CEDEX, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Lena H. Ting
3The Wallace H. Coulter Department of Biomedical Engineering, Emory University and Georgia Tech, Department of Rehabilitation Medicine, Division of Physical Therapy, Emory University School of Medicine, Atlanta, GA 30322-1119
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Lena H. Ting
Mengnan Wu
4The Wallace H. Coulter Department of Biomedical Engineering, Emory University and Georgia Tech, Atlanta, GA 30322-1119
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Mengnan Wu
Hillel J. Chiel
5Departments of Biology, Neurosciences, and Biomedical Engineering, Case Western Reserve University, Cleveland, OH 44106-7080
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Hillel J. Chiel
  • Article
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF
Loading

Abstract

A software tool for synchronization of video with signals would be of broad general use to behavioral neuroscientists. A new program, called neurotic (NEUROscience Tool for Interactive Characterization), allows users to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, is easy to use, and supports a variety of file formats. The program also facilitates collaborations by using a portable specification for loading and processing data and retrieving data files from online sources. Two examples are shown in which the software is used to explore experimental datasets with extracellular nerve or muscle recordings and simultaneous video of behavior. The configuration specification for controlling how data are located, loaded, processed, and plotted is also summarized. Algorithms for spike detection and burst detection are demonstrated. This new program could be used in many applications in which behavior and signals need to be analyzed together.

  • behavioral neuroscience
  • data sharing
  • open source
  • Python
  • video synchronization
  • visualization

Footnotes

  • The authors declare no competing financial interests.

  • This work was supported by the National Science Foundation Integrative and Organismal Systems Israel Science Foundation (NSF-IOS-BSF) Grant 1754869 and U.S.–Israel Binational Science Foundation Grant 2017624.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

View Full Text
Back to top

In this issue

eneuro: 7 (3)
eNeuro
Vol. 7, Issue 3
Month/Month
  • Table of Contents
  • Index by author
  • Ed Board (PDF)
Email

Thank you for sharing this eNeuro article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
neurotic: Neuroscience Tool for Interactive Characterization
(Your Name) has forwarded a page to you from eNeuro
(Your Name) thought you would be interested in this article in eNeuro.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Print
View Full Page PDF
Citation Tools
neurotic: Neuroscience Tool for Interactive Characterization
Jeffrey P. Gill, Samuel Garcia, Lena H. Ting, Mengnan Wu, Hillel J. Chiel
eNeuro 24 April 2020, 7 (3) ENEURO.0085-20.2020; DOI: 10.1523/ENEURO.0085-20.2020

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Respond to this article
Share
neurotic: Neuroscience Tool for Interactive Characterization
Jeffrey P. Gill, Samuel Garcia, Lena H. Ting, Mengnan Wu, Hillel J. Chiel
eNeuro 24 April 2020, 7 (3) ENEURO.0085-20.2020; DOI: 10.1523/ENEURO.0085-20.2020
Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Jump to section

  • Article
    • Abstract
    • Significance Statement
    • Introduction
    • Materials and Methods
    • Results
    • Discussion
    • Acknowledgments
    • Footnotes
    • References
    • Synthesis
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF

Keywords

  • behavioral neuroscience
  • data sharing
  • open source
  • Python
  • video synchronization
  • visualization

Responses to this article

Respond to this article

Jump to comment:

No eLetters have been published for this article.

Related Articles

Cited By...

More in this TOC Section

Open Source Tools and Methods

  • Automatic OptoDrive for Extracellular Recordings and Optogenetic Stimulation in Freely Moving Mice
  • An Open-Source and Highly Adaptable Rodent Limited Bedding and Nesting Apparatus for Chronic Early Life Stress
  • Motor Assisted Commutator to Harness Electronics in Tethered Experiments
Show more Open Source Tools and Methods

Novel Tools and Methods

  • Automatic OptoDrive for Extracellular Recordings and Optogenetic Stimulation in Freely Moving Mice
  • An Open-Source and Highly Adaptable Rodent Limited Bedding and Nesting Apparatus for Chronic Early Life Stress
  • Motor Assisted Commutator to Harness Electronics in Tethered Experiments
Show more Novel Tools and Methods

Subjects

  • Novel Tools and Methods
  • Open Source Tools and Methods
  • Home
  • Alerts
  • Follow SFN on BlueSky
  • Visit Society for Neuroscience on Facebook
  • Follow Society for Neuroscience on Twitter
  • Follow Society for Neuroscience on LinkedIn
  • Visit Society for Neuroscience on Youtube
  • Follow our RSS feeds

Content

  • Early Release
  • Current Issue
  • Latest Articles
  • Issue Archive
  • Blog
  • Browse by Topic

Information

  • For Authors
  • For the Media

About

  • About the Journal
  • Editorial Board
  • Privacy Notice
  • Contact
  • Feedback
(eNeuro logo)
(SfN logo)

Copyright © 2025 by the Society for Neuroscience.
eNeuro eISSN: 2373-2822

The ideas and opinions expressed in eNeuro do not necessarily reflect those of SfN or the eNeuro Editorial Board. Publication of an advertisement or other product mention in eNeuro should not be construed as an endorsement of the manufacturer’s claims. SfN does not assume any responsibility for any injury and/or damage to persons or property arising from or related to any use of any material contained in eNeuro.