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Research ArticleResearch Article: Methods/New Tools, Disorders of the Nervous System

RNA Isoform Diversity in Human Neurodegenerative Diseases

Christine S. Liu, Chris Park, Tony Ngo, Janani Saikumar, Carter R. Palmer, Anis Shahnaee, William J. Romanow and Jerold Chun
eNeuro 10 December 2024, 11 (12) ENEURO.0296-24.2024; https://doi.org/10.1523/ENEURO.0296-24.2024
Christine S. Liu
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
2Biomedical Sciences Program, School of Medicine, University of California San Diego, La Jolla, California 92093
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  • ORCID record for Christine S. Liu
Chris Park
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
2Biomedical Sciences Program, School of Medicine, University of California San Diego, La Jolla, California 92093
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Tony Ngo
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
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Janani Saikumar
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
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Carter R. Palmer
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
2Biomedical Sciences Program, School of Medicine, University of California San Diego, La Jolla, California 92093
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Anis Shahnaee
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
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William J. Romanow
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
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Jerold Chun
1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
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Article Information

DOI 
https://doi.org/10.1523/ENEURO.0296-24.2024
PubMed 
39658200
Published By 
Society for Neuroscience
History 
  • Received July 2, 2024
  • Revision received November 21, 2024
  • Accepted November 27, 2024
  • Published online December 10, 2024.
Copyright & Usage 
Copyright © 2024 Liu et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

Author Information

  1. Christine S. Liu1,2,*,
  2. Chris Park1,2,*,
  3. Tony Ngo1,*,
  4. Janani Saikumar1,
  5. Carter R. Palmer1,2,
  6. Anis Shahnaee1,
  7. William J. Romanow1 and
  8. Jerold Chun1
  1. 1Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California 92037
  2. 2Biomedical Sciences Program, School of Medicine, University of California San Diego, La Jolla, California 92093
  1. Correspondence should be addressed to Jerold Chun at jchun{at}sbpdiscovery.org.
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Author contributions

  1. Author contributions: C.S.L., C.P., T.N., J.S., C.R.P., and J.C. designed research; C.S.L., C.P., T.N., J.S., C.R.P., A.S., and W.J.R. performed research; C.S.L. contributed unpublished reagents/analytic tools; C.S.L., C.P., T.N., and J.S. analyzed data; C.S.L., C.P., T.N., J.S., and J.C. wrote the paper.

Disclosures

  • The authors declare no competing financial interests.

  • This work was in part supported by National Institutes of Health (NIH) Grants R01 AG071465 and R01AG065541, DoD Grant W81XWH-21-10642, and the Bruce Ford and Anne Smith Bundy Foundation and the Larry L. Hillblom Foundation (to J.C); the UC San Diego Cellular and Molecular Pharmacology training Grant T32GM007752 (to C.S.L.); and CIRM Postdoctoral Fellowship EDUC4-12813-01 (to T.N.). We thank Danielle Jones for administrative assistance, Laura Wolszon for sourcing and obtaining human brain specimens, and the Sanford Burnham Prebys Genomics Core for performing RNA integrity number analysis of brain samples.

  • We also thank the donors and families who shared these precious brain materials, of which were obtained from: Emory Alzheimer’s Disease Research Center (ADRC; NIH P50AG025688), NIH NeuroBioBank, Parkinson’s UK Brain Bank [a charity registered in England and Wales (258197) and Scotland (SC037554)], and UC San Diego ADRC (NIH P30AG062429). J.C. has an employment relationship with Neurocrine Biosciences, Inc., unrelated to the current work. J.C.'s relationship with Neurocrine Biosciences, Inc. has been reviewed and approved by Sanford Burnham Prebys Medical Discovery Institute in accordance with its Conflict-of-Interest Policies.

  • ↵*C.S.L., C.P., and T.N. contributed equally to this work.

Funding

  • NIH

    R01 AG071465; R01AG065541; T32GM007752
  • DOD

    W81XWH-21-10642-01
  • CIRM

    EDUC4-12813-01
  • Bruce Ford and Anne Smith Bundy Foundation

  • Larry L Hillblom Foundation

Other Version

  • You are viewing the most recent version of this article.
  • previous version (December 10, 2024).

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Dec 2024742132368
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Jan 2025105463194
Feb 202529402130
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eneuro: 11 (12)
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RNA Isoform Diversity in Human Neurodegenerative Diseases
Christine S. Liu, Chris Park, Tony Ngo, Janani Saikumar, Carter R. Palmer, Anis Shahnaee, William J. Romanow, Jerold Chun
eNeuro 10 December 2024, 11 (12) ENEURO.0296-24.2024; DOI: 10.1523/ENEURO.0296-24.2024

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RNA Isoform Diversity in Human Neurodegenerative Diseases
Christine S. Liu, Chris Park, Tony Ngo, Janani Saikumar, Carter R. Palmer, Anis Shahnaee, William J. Romanow, Jerold Chun
eNeuro 10 December 2024, 11 (12) ENEURO.0296-24.2024; DOI: 10.1523/ENEURO.0296-24.2024
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Keywords

  • Alzheimer’s disease
  • dementia with Lewy bodies
  • isoforms
  • long-read sequencing
  • Parkinson’s disease
  • RNA-seq

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