Skip to main content

Main menu

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Blog
    • Collections
    • Podcast
  • TOPICS
    • Cognition and Behavior
    • Development
    • Disorders of the Nervous System
    • History, Teaching and Public Awareness
    • Integrative Systems
    • Neuronal Excitability
    • Novel Tools and Methods
    • Sensory and Motor Systems
  • ALERTS
  • FOR AUTHORS
  • ABOUT
    • Overview
    • Editorial Board
    • For the Media
    • Privacy Policy
    • Contact Us
    • Feedback
  • SUBMIT

User menu

Search

  • Advanced search
eNeuro
eNeuro

Advanced Search

 

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Blog
    • Collections
    • Podcast
  • TOPICS
    • Cognition and Behavior
    • Development
    • Disorders of the Nervous System
    • History, Teaching and Public Awareness
    • Integrative Systems
    • Neuronal Excitability
    • Novel Tools and Methods
    • Sensory and Motor Systems
  • ALERTS
  • FOR AUTHORS
  • ABOUT
    • Overview
    • Editorial Board
    • For the Media
    • Privacy Policy
    • Contact Us
    • Feedback
  • SUBMIT
PreviousNext
Research ArticleResearch Article: Methods/New Tools, Novel Tools and Methods

NeuroART: Real-Time Analysis and Targeting of Neuronal Population Activity during Calcium Imaging for Informed Closed-Loop Experiments

Zac Bowen, Dulara De Zoysa, Kelson Shilling-Scrivo, Samira Aghayee, Giorgio Di Salvo, Aleksandr Smirnov, Patrick O. Kanold and Wolfgang Losert
eNeuro 12 September 2024, 11 (10) ENEURO.0079-24.2024; https://doi.org/10.1523/ENEURO.0079-24.2024
Zac Bowen
1Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742
2Fraunhofer USA Center Mid-Atlantic, Riverdale, Maryland 20737
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Dulara De Zoysa
1Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742
3Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Dulara De Zoysa
Kelson Shilling-Scrivo
4Department of Anatomy and Neurobiology, University of Maryland School of Medicine, Baltimore, Maryland 21230
5Department of Biology, University of Maryland, College Park, Maryland 20742
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Samira Aghayee
1Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Giorgio Di Salvo
6Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 20215
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Aleksandr Smirnov
1Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742
7Kavli NDI, Johns Hopkins University, Baltimore, Maryland 20215
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Patrick O. Kanold
5Department of Biology, University of Maryland, College Park, Maryland 20742
6Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 20215
7Kavli NDI, Johns Hopkins University, Baltimore, Maryland 20215
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Wolfgang Losert
1Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Wolfgang Losert
  • Article
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF
Loading

Article Information

DOI 
https://doi.org/10.1523/ENEURO.0079-24.2024
PubMed 
39266327
Published By 
Society for Neuroscience
History 
  • Received December 15, 2023
  • Revision received September 4, 2024
  • Accepted September 9, 2024
  • Published online September 12, 2024.
Copyright & Usage 
Copyright © 2024 Bowen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

Author Information

  1. Zac Bowen1,2,*,
  2. Dulara De Zoysa1,3,*,
  3. Kelson Shilling-Scrivo4,5,
  4. Samira Aghayee1,
  5. Giorgio Di Salvo6,
  6. Aleksandr Smirnov1,7,
  7. Patrick O. Kanold5,6,7 and
  8. Wolfgang Losert1
  1. 1Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742
  2. 2Fraunhofer USA Center Mid-Atlantic, Riverdale, Maryland 20737
  3. 3Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742
  4. 4Department of Anatomy and Neurobiology, University of Maryland School of Medicine, Baltimore, Maryland 21230
  5. 5Department of Biology, University of Maryland, College Park, Maryland 20742
  6. 6Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 20215
  7. 7Kavli NDI, Johns Hopkins University, Baltimore, Maryland 20215
  1. Correspondence should be addressed to Wolfgang Losert at wlosert{at}umd.edu.
View Full Text

Author contributions

  1. Author contributions: P.O.K. and W.L. designed research; Z.B., D.D.Z., K.S.-S., S.A., G.D.S., and A.S. performed research; K.S.-S., S.A., P.O.K., and W.L. contributed unpublished reagents/analytic tools; Z.B., D.D.Z., G.D.S., and A.S. analyzed data; Z.B., D.D.Z., K.S.-S., S.A., A.S., P.O.K., and W.L. wrote the paper.

Disclosures

  • The authors declare no competing financial interests.

  • We thank Daniel Winkowski and Samuel Potter for their code contributions to early versions of the software. We thank Aminah Sheikh and Jonah Mittelstadt for testing the early versions of the application. We also thank Dr. Kate M. O’Neill for her valuable feedback on the manuscript and Gioula Kalapotharakou for annotating and modularizing the MATLAB codes.

  • This work was funded by the National Institutes of Health, USA BRAIN initiative grant, 1U19NS107464. NeuroART: Real-time analysis and targeting of neuronal population activity during calcium imaging for informed closed-loop experiments.

  • ↵*Z.B. and D.D.Z. contributed equally to this work.

Funding

  • NIH BRAIN Initiative

    1U19NS107464

Other Version

  • You are viewing the most recent version of this article.
  • previous version (September 12, 2024).

Online Impact

 

Article usage

Select a custom date range for the past year
E.g., 2026-04-18
to
E.g., 2026-04-18

Article usage: September 2024 to April 2026

AbstractFullPdf
Sep 20243790200
Oct 2024169302119
Nov 20245324379
Dec 20244416351
Total 2024645708449
Jan 20252814933
Feb 20252815338
Mar 20253218837
Apr 20252416432
May 20253014141
Jun 20252213736
Jul 20253716644
Aug 20252412629
Sep 20252519640
Oct 20254517037
Nov 20252715420
Dec 20253918947
Total 20253611933434
Jan 20262518242
Feb 20262026839
Mar 20261724955
Apr 202679742
Total 202669796178
Total107534371061
Back to top

In this issue

eneuro: 11 (10)
eNeuro
Vol. 11, Issue 10
October 2024
  • Table of Contents
  • Index by author
  • Masthead (PDF)
Email

Thank you for sharing this eNeuro article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
NeuroART: Real-Time Analysis and Targeting of Neuronal Population Activity during Calcium Imaging for Informed Closed-Loop Experiments
(Your Name) has forwarded a page to you from eNeuro
(Your Name) thought you would be interested in this article in eNeuro.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Print
View Full Page PDF
Citation Tools
NeuroART: Real-Time Analysis and Targeting of Neuronal Population Activity during Calcium Imaging for Informed Closed-Loop Experiments
Zac Bowen, Dulara De Zoysa, Kelson Shilling-Scrivo, Samira Aghayee, Giorgio Di Salvo, Aleksandr Smirnov, Patrick O. Kanold, Wolfgang Losert
eNeuro 12 September 2024, 11 (10) ENEURO.0079-24.2024; DOI: 10.1523/ENEURO.0079-24.2024

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Respond to this article
Share
NeuroART: Real-Time Analysis and Targeting of Neuronal Population Activity during Calcium Imaging for Informed Closed-Loop Experiments
Zac Bowen, Dulara De Zoysa, Kelson Shilling-Scrivo, Samira Aghayee, Giorgio Di Salvo, Aleksandr Smirnov, Patrick O. Kanold, Wolfgang Losert
eNeuro 12 September 2024, 11 (10) ENEURO.0079-24.2024; DOI: 10.1523/ENEURO.0079-24.2024
Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Jump to section

  • Article
    • Abstract
    • Significance Statement
    • Introduction
    • Materials and Methods
    • Results
    • Discussion
    • Footnotes
    • References
    • Synthesis
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF

Keywords

  • auditory cortex tuning
  • holographic optogenetics
  • neuronal population activity
  • neuronal receptive fields
  • real-time analysis
  • two-photon calcium imaging

Responses to this article

Respond to this article

Jump to comment:

No eLetters have been published for this article.

Related Articles

Cited By...

More in this TOC Section

Research Article: Methods/New Tools

  • Adapting a two-photon scanning microscope for simultaneous single-photon imaging of an infrared dopamine sensor
  • Age-related decline in myelin markers and oligodendrocyte density in rhesus macaque prefrontal cortex
  • Different behavioral measures of conditioned magazine activity can tell different stories about brain function
Show more Research Article: Methods/New Tools

Novel Tools and Methods

  • Adapting a two-photon scanning microscope for simultaneous single-photon imaging of an infrared dopamine sensor
  • Optimizing and Benchmarking Machine Learning and Traditional Synaptic Event Detection Pipelines in Neurophysiology Experiments
  • TST Score Helper: An Open-Source Graphical User Interface for Assisted Manual Scoring of the Tail Suspension Test
Show more Novel Tools and Methods

Subjects

  • Novel Tools and Methods
  • Home
  • Alerts
  • Follow SFN on BlueSky
  • Visit Society for Neuroscience on Facebook
  • Follow Society for Neuroscience on Twitter
  • Follow Society for Neuroscience on LinkedIn
  • Visit Society for Neuroscience on Youtube
  • Follow our RSS feeds

Content

  • Early Release
  • Current Issue
  • Latest Articles
  • Issue Archive
  • Blog
  • Browse by Topic

Information

  • For Authors
  • For the Media

About

  • About the Journal
  • Editorial Board
  • Privacy Notice
  • Contact
  • Feedback
(eNeuro logo)
(SfN logo)

Copyright © 2026 by the Society for Neuroscience.
eNeuro eISSN: 2373-2822

The ideas and opinions expressed in eNeuro do not necessarily reflect those of SfN or the eNeuro Editorial Board. Publication of an advertisement or other product mention in eNeuro should not be construed as an endorsement of the manufacturer’s claims. SfN does not assume any responsibility for any injury and/or damage to persons or property arising from or related to any use of any material contained in eNeuro.