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Research ArticleResearch Article: Methods/New Tools, Novel Tools and Methods

Meso-Py: Dual Brain Cortical Calcium Imaging in Mice during Head-Fixed Social Stimulus Presentation

Nicholas J. Michelson, Federico Bolaños, Luis A. Bolaños, Matilde Balbi, Jeffrey M. LeDue and Timothy H. Murphy
eNeuro 1 December 2023, 10 (12) ENEURO.0096-23.2023; https://doi.org/10.1523/ENEURO.0096-23.2023
Nicholas J. Michelson
1Department of Psychiatry, Kinsmen Laboratory of Neurological Research, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
2Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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Federico Bolaños
1Department of Psychiatry, Kinsmen Laboratory of Neurological Research, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
2Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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Luis A. Bolaños
1Department of Psychiatry, Kinsmen Laboratory of Neurological Research, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
2Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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Matilde Balbi
1Department of Psychiatry, Kinsmen Laboratory of Neurological Research, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
2Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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Jeffrey M. LeDue
1Department of Psychiatry, Kinsmen Laboratory of Neurological Research, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
2Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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Timothy H. Murphy
1Department of Psychiatry, Kinsmen Laboratory of Neurological Research, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
2Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada
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Figures

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  • Figure 1.
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    Figure 1.

    Setup for dual mouse brain imaging system. a, Cartoon depiction of surgical preparation for transcranial mesoscale imaging, with custom cut coverslip and titanium bar for head fixation. x denotes the location of bregma. b, Close-up view of mouse positioning during the interaction phase of the experiment. c, Larger field of view render of the imaging system. Numbered components are as follows: (1) Raspberry Pi brain imaging camera; (2) GCaMP excitation and hemodynamic reflectance LED light guide; (3) ultrasonic microphone; (4) stationary mouse; (5) moving mouse; (6) Raspberry Pi infrared behavior camera; (7) stage translation knob; 8) stepper motor with belt controlling stage translation. Blue arrows indicate direction of motion of the translatable rail. d, Example image of whisker overlap during a whisking event captured using a high-speed camera. Image is spatially high-pass filtered to accentuate whiskers.

  • Figure 2.
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    Figure 2.

    Mice coordinate behavior during interaction. a, Example infrared (IR) bottom camera image of both mice during the interaction phase of the experiment. Regions over each mouse’s whiskers and forelimbs are shown in magenta and cyan boxes, respectively, to estimate motion. b, Average percentage of time spent behaving during the first separated phase of the experiment (top) and the interaction phase (bottom). Intersecting regions show concurrent whisker and forelimb movements (∼5% of total time). c, Timeline of experimental paradigm (top) and ethograms for the stationary and moving mouse (bottom). d, Cross-correlation of each mouse’s binary behavior vectors during the interaction phase where whiskers could freely touch open (black) versus during trials where a mesh (red) or opaque (blue) barrier were placed between the animals, preventing physical touch. Behaviors across mice during the interaction phase were significantly correlated near 0 lag when there was no barrier present (open condition). e, Intersection over union (Jaccard similarity index) for the behavior vectors was significantly greater during the interaction phase across mice for trials with no barriers present compared with mesh or opaque barrier trials. n = 33 mouse pairs; one-way ANOVA with post hoc Bonferroni test for multiple comparisons; F(2,42) = 10.1; p = 2.6 × 10−4. See Extended Data Figures 2-1 and 2-2 for additional data. Asterisk indicates significance.

  • Figure 3.
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    Figure 3.

    Interbrain synchronization during interaction. a, Example images of dorsal cortical windows for stationary mouse (top) and moving mouse (bottom). b, Representative example of median GCaMP6s activity across the cortical mask for each mouse. c, Pearson correlation coefficients of the two global signals were significantly greater during the interaction phase than either of the two separate phases (n = 35 mouse pairs, p < 0.001; repeated measures ANOVA with post hoc Bonferroni correction for multiple comparisons). Interbrain correlations during interaction were significantly greater than trial-shuffled interaction-phase pairings (n = 35 mouse pairs vs n = 595 shuffled mouse pairs, p < 0.001; t test). d, Interbrain signal correlation does not depend on cagemate (CM) versus noncagemate (NCM) experiments (t test, p = 0.66, cagemates n = 20 mouse pairs, noncagemates n = 13 mouse pairs). e, Expanded view of global signals during interaction phase with behavior annotations overlaid. f, Global cortical signal ΔF/F0 is positively correlated with duration of whisking or forelimb movement (Spearman correlation coefficient; r = 0.40; p < 0.001). g, Example image of transcranial mask with putative cortical regions labeled. Abbreviations: ALM, anterior lateral motor cortex; M2, secondary motor cortex; wM1, whisker motor cortex; aBC, anterior barrel cortex; pBC, posterior barrel cortex; HL, hindlimb; FL; forelimb; lPTA; lateral parietal association area; RS, retrosplenial cortex; V1, primary visual cortex. h, Averaged interbrain correlation matrices across all experiments during the period before interaction (left) and the period during interaction (right). i, Change in interbrain correlation for each region of interest against all other regions, averaged across mice (n = 35 mouse pairs, *p < 0.05; two-way ANOVA with post hoc Tukey–Kramer test). Bars show mean ± SE. j, Time-varying interbrain coherence, computed with a 45-s window on the global cortical signals, and averaged across all experiments, shows an increase in coherence from 0 to 0.2 Hz during the interaction phase (white dashed lines). k, l, Pearson correlation coefficients of the two global signals showed no significant difference between trial phases when an opaque partition (k; p = 0.34, repeated measures ANOVA) or copper mesh (l; p = 0.88, repeated measures ANOVA) were placed between the mice, preventing whisker contact. Asterisks indicate significance. NS indicates not significant. See Extended Data Figures 3-1, 3-2, 3-3, and 3-4 for additional data.

  • Figure 4.
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    Figure 4.

    Ridge regression model in open interaction trials confirms somatotopic representation of whisker and forelimb behaviors across animals. a, Binary event vectors (colored lines) considered in the ridge regression model. Model included nine separate interaction trials which had been concatenated together (dotted lines; partner limb and whisker behavioral variables were only assessed during the together phase). b, Explained variance for the full model after 10-fold cross-validation, projected back onto the cortical map. Scale bar: 2 mm. c–e, Unique contribution for each stationary mouse behavioral model variable; taken as the difference in explained variance between the full model and the reduced model with the specified variable randomly permuted. f, g, Same as c–e, except for the partner mouse behaviors. h–j, Same as c–e, except for trial-associated events. See Extended Data Figures 4-1, 4-2, 4-3, and 4-4 for additional data.

Tables

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    Table 1

    Parts list for social interaction system

    Description#ManufacturerPart number
    Aluminum Breadboard 18 × 24 × 1/2”, 1/4”−20 Taps1ThorlabsMB1824
    Ø1” Pillar Posts with 1/4”−20 Taps, 2”4ThorlabsRS2
    Ø1” Pillar Posts with 1/4”−20 Taps, 3”8ThorlabsRS3
    Ø1” Pillar Posts with 1/4”−20 Taps, 6”8ThorlabsRS6
    Clamping Fork, 1.24” Counterbored Slot, Universal4ThorlabsCF125
    Ø1/2” Pedestal Post Holder3ThorlabsPH2E
    Ø1/2” Optical Post, SS, 8–32 Setscrew, 1/4”−20 Tap, L = 8”3ThorlabsTR8
    Ø1/2” Optical Post, SS, 8-32 Setscrew, 1/4”−20 Tap, L = 12”1ThorlabsTR12
    Right-Angle Clamp for Ø1/2” Posts, 3/16” Hex2ThorlabsRA90
    Ø25 mm Post Spacer, Thickness = 3 mm1ThorlabsRS3M
    RPi Camera (F), Supports Night Vision, Adjustable-Focus2Waveshare10299
    Flex Cable for Raspberry Pi Camera or Display - 2 m2Adafruit2144
    Triple light guide and imaging parts
     Triple Bandpass Filter (camera)1Chroma69013m
     Liquid Light Guide1ThorlabsLLG0338-4
     SM1 Adapter for Liquid Light Guide1ThorlabsAD3LLG
     SM1 Lens Tube, 3.00” Thread Depth3ThorlabsSM1L30
     SM1 Lens Tube, 1.00” Thread Depth3ThorlabsSM1L10
     SM1 Lens Tube, 2.00” Thread Depth1ThorlabsSM1L20
     SM1 Retaining Rings2ThorlabsSM1RR-P10
     Dichroic Cage Cube2ThorlabsCM1-DC
     Cage Cube Connector1ThorlabsCM1-CC
     Compact Clamp with Variable Height1ThorlabsCL3
     Bi-Convex Lens4ThorlabsLB1761
     AT455DC size: 26 × 38 mm1ChromaAT455DC
     25 × 36 mm Longpass Dichroic Mirror, 550 nm Cutoff1ThorlabsDMLP550R
     Ø1” Bandpass Filter, CWL = 620 ± 2 nm, FWHM = 10 ± 2 nm1ThorlabsFB620-10
     ET480/30× size: 25 mmR R=Mounted in Ring1ChromaET480/30x
     Ø1” Bandpass Filter, CWL = 440 ± 2 nm, FWHM = 10 ± 2 nm1ThorlabsFB440-10
     Royal-Blue (448 nm) Rebel LED1Luxeon StarSP-01-V4
     Blue (470 nm) Rebel LED1Luxeon StarSP-01-B6
     Red-Orange (617 nm) Rebel LED1Luxeon StarSP-01-E6
    Machined parts (stainless steel)
     Milled as-1.50_2_v2.SLDPRT3
     Spacer_with_wire_hole_as-.500_v2.SLDPRT3
     LED_mount_as-1.50_v2.SLDPRT3
    3D-printed parts (black PLA)
     TripleLEDLightGuide_Base.stl1
     Light_Guide_Mount_V2.stl1
    • View popup
    Table 2

    Statistical table of all analyses

     Data structureType of testTest values and power
    Figure 2dAll groups normally distributedOne-way ANOVA with post hoc Bonferroni multiple comparisons testF(2,42) = 10.2; p = 2.4 × 10–4
    Figure 2eAll groups normally distributedOne-way ANOVA with post hoc Bonferroni multiple comparisons testF(2,42) = 10.1; p = 2.6 × 10–4
    Figure 3cAll groups normally distributedRepeated measures ANOVA with Bonferroni’s multiple comparisons testF(2,68) = 11.2; p = 0.002
    Figure 3dAll groups normally distributedTwo sample t testt(33) = −0.44; p = 0.66
    Figure 3fGroups not normally distributedSpearman correlation coefficientr = 0.40; p = 6.0 × 10−81
    Figure 3iAll groups normally distributedTwo-way ANOVA with post hoc Bonferroni testTrial phase: F(1,680) = 136; p = 1.0 × 10−28
    Brain region: F(9,680) = 0.81; p = 0.61
    Interaction: F(9,680) = 1.2; p = 0.30
    Figure 3kAll groups normally distributedRepeated measures ANOVAF(2,28) = 1.0; p = 0.34
    Figure 3lAll groups normally distributedRepeated measures ANOVAF(2,30) = 0.22; p = 0.88
    Extended Data Figure 2-2aAll groups normally distributedOne-way ANOVAWhisker movements: F(2,51) = 0.68; p = 0.51
    Forelimb movements: F(2,51) = 1.02; p = 0.37
    Extended Data Figure 2-2bAll groups normally distributedOne-way ANOVAWhisker movements: F(2,45) = 0.28; p = 0.76
    Forelimb movements: F(2,45) = 0.41; p = 0.67
    Extended Data Figure 2-2cAll groups normally distributedOne-way ANOVAWhisker movements: F(2,30) = 0.85; p = 0.44
    Forelimb movements: F(2,30) = 0.05; p = 0.95
    Extended Data Figure 3-1bAll groups normally distributedOne-way ANOVAF(2,9) = 0.91; p = 0.44
    Extended Data Figure 3-3bAll groups normally distributedTwo-way ANOVA with post hoc Bonferroni testTrial phase: F(1,680) = 44.1, p = 6.3 × 10–11
    Brain region: F(9,680) = 0.30, p = 0.98
    Interaction: F(9,680) = 0.01, p = 1.0

Movies

  • Figures
  • Tables
  • Extended Data
  • Movie 1.

    Cortical signal responses for interacting mice. Data from two head-restrained tTA-GCaMP6s mice at the onset of the interaction phase. The two pseudo-colored images show the processed calcium images from the left and right mouse. The color bar indicates the ΔF/F0 of the signals. Behavior video is shown below.

Extended Data

  • Figures
  • Tables
  • Movies
  • Extended Data Figure 2-1

    Protocol for estimating behaviors. a, Raw motion energy within the whisker region of interest. b, Smoothed whisker motion energy. Motion energy exceeding a threshold of the mean + 1 SD (red line) is classified as binary movement behavior (shaded areas). c, Example montage of whisking behavior. Images are taken from beneath the mouse (see Figs. 1 and 2). Individual frames are cropped and displayed with saturated pixels, and a Canny edge detection algorithm was run over the whisker region to enhance visualization of whiskers. A whisker protraction event can be seen at 0.14 s. d–f, Same as a–c for forelimb movements. Individual frames are cropped to aid with visualization. Left and right paws are labelled with red and cyan markers, respectively. Download Figure 2-1, TIF file.

  • Extended Data Figure 2-2

    Number of whisker or forelimb movements do not change between trial phases. Number of whisker movements (left) and forelimb movements (right) for all trial phases during open social interaction experiments (a) and barrier controls (b, c). During: during interaction period while mice are stationary and together (face to face); before/after: before/after interaction period while mice are stationary and apart. No significance between trial phases for all conditions (open n = 33 trials, mesh n = 16 trials, opaque n = 11 trials). Download Figure 2-2, TIF file.

  • Extended Data Figure 3-1

    No interanimal correlation observed in Thy1-GFP mice. a, Representative example of GFP activity global signals over the entire cortical mask for the stationary mouse (top) and moving mouse (bottom). Green shading indicates period when mice were together. b, Pearson correlation coefficients computed at each phase of the experiment. Dashed line shows median correlation coefficient between global signals for the GCaMP mice during the interaction phase of the experiment from Figure 3c. No significant difference was observed between phases. n = 4 trials, p = 0.4, one-way ANOVA. Download Figure 3-1, TIF file.

  • Extended Data Figure 3-2

    Seed pixel correlation maps for putative cortical ROIs from an example mouse. Pearson correlation coefficients over the entire trial (spanning both separate and together phases) were calculated between every pixel within the cortical mask and the averaged signal obtained from a five by five-pixel neighborhood chosen from the specified region in each panel. Scale bar: 2 mm. Download Figure 3-2, TIF file.

  • Extended Data Figure 3-3

    Intrabrain correlations increase during interaction phase of the trial. a, Averaged intrabrain correlation matrices across all experiments during the period before interaction (left) and the period during interaction (right). b, Change in intrabrain correlation for each region of interest against all other regions, averaged across mice (n = 35 mouse pairs, *p < 0.05; two-way ANOVA with post hoc Tukey–Kramer test). Bars show mean ± SE; y-axis is scaled similarly to interbrain correlation changes from Figure 3i. Download Figure 3-3, TIF file.

  • Extended Data Figure 3-4

    No ultrasonic vocalizations detected during social-interaction tests. Example data from the social interaction experiment (top), compared to a control experiment taken from a breeder mouse introduced to a female (bottom). Ultrasonic vocalizations are clearly observed in the female stimulus control experiment, but not in the two-mouse imaging experiments. Download Figure 3-4, TIF file.

  • Extended Data Figure 4-1

    Ridge regression model on an additional mouse in open interaction trials. a–j, Binary event vectors (colored lines) considered in the ridge regression model. Model included three separate interaction trials which had been concatenated together (dotted lines; partner limb and whisker behavioral variables were only assessed during the together phase). b, Explained variance for the full model after 10-fold cross-validation, projected back onto the cortical map. Scale bar: 2 mm. c–e, Unique contribution for each stationary mouse behavioral model variable; taken as the difference in explained variance between the full model and the reduced model with the specified variable randomly permuted. f, g, Same as c–e, except for the partner mouse behaviors. h–j, Same as c–e, except for trial-associated events. Download Figure 4-1, TIF file.

  • Extended Data Figure 4-2

    Ridge regression model on an additional mouse in open interaction trials. a–j, Binary event vectors (colored lines) considered in the ridge regression model. Model included two separate interaction trials which had been concatenated together (dotted lines; partner limb and whisker behavioral variables were only assessed during the together phase). b, Explained variance for the full model after 10-fold cross-validation, projected back onto the cortical map. Scale bar: 2 mm. c–e, Unique contribution for each stationary mouse behavioral model variable; taken as the difference in explained variance between the full model and the reduced model with the specified variable randomly permuted. f, g, Same as c–e, except for the partner mouse behaviors. h–j, Same as c–e, except for trial-associated events. Download Figure 4-2, TIF file.

  • Extended Data Figure 4-3

    Ridge regression model in mesh barrier trials. a, Binary event vectors (colored lines) considered in the ridge regression model. Model included four separate interaction trials which had been concatenated together (dotted lines; partner limb and whisker behavioral variables were only assessed during the together phase). b, Explained variance for the full model after 10-fold cross-validation, projected back onto the cortical map. Scale bar: 2 mm. c–e, Unique contribution for each stationary mouse behavioral model variable; taken as the difference in explained variance between the full model and the reduced model with the specified variable randomly permuted. f, g, Same as c–e, except for the partner mouse behaviors. h–j, Same as c–e, except for trial-associated events. Download Figure 4-3, TIF file.

  • Extended Data Figure 4-4

    Ridge regression model on an additional mouse in mesh barrier trials. a–j, Binary event vectors (colored lines) considered in the ridge regression model. Model included four separate interaction trials which had been concatenated together (dotted lines; partner limb and whisker behavioral variables were only assessed during the together phase). b, Explained variance for the full model after 10-fold cross-validation, projected back onto the cortical map. Scale bar: 2 mm. c–e, Unique contribution for each stationary mouse behavioral model variable; taken as the difference in explained variance between the full model and the reduced model with the specified variable randomly permuted. f, g, Same as c–e, except for the partner mouse behaviors. h–j, Same as c–e, except for trial-associated events. Download Figure 4-4, TIF file.

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Meso-Py: Dual Brain Cortical Calcium Imaging in Mice during Head-Fixed Social Stimulus Presentation
Nicholas J. Michelson, Federico Bolaños, Luis A. Bolaños, Matilde Balbi, Jeffrey M. LeDue, Timothy H. Murphy
eNeuro 1 December 2023, 10 (12) ENEURO.0096-23.2023; DOI: 10.1523/ENEURO.0096-23.2023

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Meso-Py: Dual Brain Cortical Calcium Imaging in Mice during Head-Fixed Social Stimulus Presentation
Nicholas J. Michelson, Federico Bolaños, Luis A. Bolaños, Matilde Balbi, Jeffrey M. LeDue, Timothy H. Murphy
eNeuro 1 December 2023, 10 (12) ENEURO.0096-23.2023; DOI: 10.1523/ENEURO.0096-23.2023
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Keywords

  • Cortex
  • GCaMP
  • mesoscale
  • mouse
  • social interaction
  • whisker

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