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Open Source Tools and Methods

  • Open Source Tools and Methods, Novel Tools and Methods
    A Semi-Automated Workflow for Brain Slice Histology Alignment, Registration, and Cell Quantification (SHARCQ)
    Kristoffer Lauridsen, Annie Ly, Emily D. Prévost, Connor McNulty, Dillon J. McGovern, Jian Wei Tay, Joseph Dragavon and David H. Root
    eNeuro 8 April 2022, 9 (2) ENEURO.0483-21.2022; DOI: https://doi.org/10.1523/ENEURO.0483-21.2022
  • Open Source Tools and Methods, Novel Tools and Methods
    SMART: An Open-Source Extension of WholeBrain for Intact Mouse Brain Registration and Segmentation
    Michelle Jin, Joseph D. Nguyen, Sophia J. Weber, Carlos A. Mejias-Aponte, Rajtarun Madangopal and Sam A. Golden
    eNeuro 8 April 2022, 9 (3) ENEURO.0482-21.2022; DOI: https://doi.org/10.1523/ENEURO.0482-21.2022
  • Open Source Tools and Methods, Novel Tools and Methods
    FASTMAP: Open-Source Flexible Atlas Segmentation Tool for Multi-Area Processing of Biological Images
    Dylan J. Terstege, Daniela O. Oboh and Jonathan R. Epp
    eNeuro 28 February 2022, 9 (2) ENEURO.0325-21.2022; DOI: https://doi.org/10.1523/ENEURO.0325-21.2022
  • Open Source Tools and Methods, Novel Tools and Methods
    Custom-Built Operant Conditioning Setup for Calcium Imaging and Cognitive Testing in Freely Moving Mice
    Philip Vassilev, Esmeralda Fonseca, Giovanni Hernandez, Andrea Haree Pantoja-Urban, Michel Giroux, Dominique Nouel, Elise Van Leer and Cecilia Flores
    eNeuro 1 February 2022, 9 (1) ENEURO.0430-21.2022; DOI: https://doi.org/10.1523/ENEURO.0430-21.2022
  • Open Source Tools and Methods, Novel Tools and Methods
    MRI Stereoscope: A Miniature Stereoscope for Human Neuroimaging
    I. Betina Ip, Ivan Alvarez, Mike Tacon, Andrew J. Parker and Holly Bridge
    eNeuro 19 January 2022, 9 (1) ENEURO.0382-21.2021; DOI: https://doi.org/10.1523/ENEURO.0382-21.2021
  • Open Source Tools and Methods, Novel Tools and Methods
    RapID Cell Counter: Semi-Automated and Mid-Throughput Estimation of Cell Density within Diverse Cortical Layers
    Aarthi Sekar, Thiago M. Sanches, Keiko Hino, Matangi Kumar, Juliann Wang, Elisa Ha, Blythe Durbin-Johnson, Sergi Simó and Megan Y. Dennis
    eNeuro 1 November 2021, 8 (6) ENEURO.0185-21.2021; DOI: https://doi.org/10.1523/ENEURO.0185-21.2021
  • Open Source Tools and Methods, Novel Tools and Methods
    DBscorer: An Open-Source Software for Automated Accurate Analysis of Rodent Behavior in Forced Swim Test and Tail Suspension Test
    Arnab Nandi, Garima Virmani, Aatmika Barve and Swananda Marathe
    eNeuro 8 October 2021, 8 (6) ENEURO.0305-21.2021; DOI: https://doi.org/10.1523/ENEURO.0305-21.2021
  • Open Source Tools and Methods, Novel Tools and Methods
    GhostiPy: An Efficient Signal Processing and Spectral Analysis Toolbox for Large Data
    Joshua P. Chu and Caleb T. Kemere
    eNeuro 23 September 2021, 8 (6) ENEURO.0202-21.2021; DOI: https://doi.org/10.1523/ENEURO.0202-21.2021
  • Open Source Tools and Methods, Novel Tools and Methods
    A Novel Microcontroller-Based System for the Wheel-Running Activity in Mice
    Meina Zhu, Deepa Kamath Kasaragod, Kazuya Kikutani, Kei Taguchi and Hidenori Aizawa
    eNeuro 3 September 2021, 8 (6) ENEURO.0260-21.2021; DOI: https://doi.org/10.1523/ENEURO.0260-21.2021
  • Open Source Tools and Methods, Novel Tools and Methods
    Full-Band EEG Recordings Using Hybrid AC/DC-Divider Filters
    Azat Nasretdinov, Alexander Evstifeev, Daria Vinokurova, Gulshat Burkhanova-Zakirova, Kseniya Chernova, Zoya Churina and Roustem Khazipov
    eNeuro 11 August 2021, 8 (4) ENEURO.0246-21.2021; DOI: https://doi.org/10.1523/ENEURO.0246-21.2021

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eNeuro eISSN: 2373-2822

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