… Benchmarking on BAliBASE indicated that the DCA strategy does slightly better that
ClustalW, even if the four largest BAliBASE test sets could not be computed with DCA (Notredame, …

This review focuses on recent trends in multiple sequence alignment tools. It describes the
latest algorithmic improvements including the extension of consistency-based methods to the …

An ever-increasing number of biological modeling methods depend on the assembly of an
accurate multiple sequence alignment (MSA). These include phylogenetic trees, profiles, and …

… (C) The number of orthologs discovered for each lncRNA. LnRNAs with zero orthologs are
those … (C) Correlations of expression of intersected genes for different categories: Intron AS (…

… (G) are aligned, as well as C(G) and A(G). We conclude that there is an alignment of A(G)
with B(G) through sequence C. We associate that alignment with a weight equal to the …

The laboratory mouse shares the majority of its protein-coding genes with humans, making
it the premier model organism in biomedical research, yet the two mammals differ in …

The increasing complexity of readouts for omics analyses goes hand-in-hand with concerns
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …

… indicates a significant enrichment in genes involved in differentiation and morphogenesis
(Figure 2C). An example of such change in expression of an important gene involved in extra-c…

This article introduces a new interface for T-Coffee, a consistency-based multiple sequence
alignment program. This interface provides an easy and intuitive access to the most popular …

Importance The coronavirus disease 2019 (COVID-19) pandemic and quarantine measures
have raised concerns regarding their psychological effects on populations. Among the …