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Page 1
HNCcorr: A Novel Combinatorial Approach for Cell Identification in Calcium-Imaging Movies.
eNeuro. 2019 Apr 15;6(2):ENEURO.0304-18.2019. doi: 10.1523/ENEURO.0304-18.2019. eCollection 2019 Mar-Apr.
eNeuro. 2019.
PMID: 31058211
Free PMC article.
Identifying Drug Sensitivity Subnetworks with NETPHIX.
Kim YA, Sarto Basso R, Wojtowicz D, Liu AS, Hochbaum DS, Vandin F, Przytycka TM.
Kim YA, et al. Among authors: hochbaum ds.
iScience. 2020 Sep 29;23(10):101619. doi: 10.1016/j.isci.2020.101619. eCollection 2020 Oct 23.
iScience. 2020.
PMID: 33089107
Free PMC article.
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Network-based approaches elucidate differences within APOBEC and clock-like signatures in breast cancer.
Kim YA, Wojtowicz D, Sarto Basso R, Sason I, Robinson W, Hochbaum DS, Leiserson MDM, Sharan R, Vadin F, Przytycka TM.
Kim YA, et al. Among authors: hochbaum ds.
Genome Med. 2020 May 29;12(1):52. doi: 10.1186/s13073-020-00745-2.
Genome Med. 2020.
PMID: 32471470
Free PMC article.
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Efficient algorithms to discover alterations with complementary functional association in cancer.
Sarto Basso R, Hochbaum DS, Vandin F.
Sarto Basso R, et al. Among authors: hochbaum ds.
PLoS Comput Biol. 2019 May 23;15(5):e1006802. doi: 10.1371/journal.pcbi.1006802. eCollection 2019 May.
PLoS Comput Biol. 2019.
PMID: 31120875
Free PMC article.
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Path costs in evolutionary tree reconstruction.
Hochbaum DS, Pathria A.
Hochbaum DS, et al.
J Comput Biol. 1997 Summer;4(2):163-75. doi: 10.1089/cmb.1997.4.163.
J Comput Biol. 1997.
PMID: 9228615
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Polynomial time algorithms for ratio regions and a variant of normalized cut.
Hochbaum DS.
Hochbaum DS.
IEEE Trans Pattern Anal Mach Intell. 2010 May;32(5):889-98. doi: 10.1109/TPAMI.2009.80.
IEEE Trans Pattern Anal Mach Intell. 2010.
PMID: 20299712
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Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores.
Hochbaum DS, Hsu CN, Yang YT.
Hochbaum DS, et al.
Bioinformatics. 2012 Jun 15;28(12):i106-14. doi: 10.1093/bioinformatics/bts232.
Bioinformatics. 2012.
PMID: 22689749
Free PMC article.
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