List of DEGs after H2A.Z.1 and H2A.Z.2 KD-part B (downregulated after H2A.Z.1 KD)
| symbol | scrambled expression | shh2az.1 expression | log2 fold change | p value | fdr |
|---|---|---|---|---|---|
| loc287522 | 6.259898423 | 3.781938662 | —2.477959761 | 6.60e—06 | 0.049404732 |
| rgd1566064_predicted | 12.81190937 | 9.362864495 | —3.449044872 | 7.18e—06 | 0.049404732 |
| tomm34_predicted | 9.80058324 | 8.124036057 | —1.676547183 | 8.08e—06 | 0.049404732 |
| ck363699 | 6.61546991 | 5.78793267 | —0.827537241 | 1.87e—05 | 0.065026891 |
| bf562307 | 9.734906301 | 8.443322223 | —1.291584078 | 2.29e—05 | 0.065026891 |
| tc553984 | 10.57601225 | 9.76833986 | —0.807672386 | 2.34E—05 | 0.065026891 |
| AI599250 | 7.713399206 | 7.087788209 | —0.625610997 | 3.23E—05 | 0.076745729 |
| BC098774 | 7.237548308 | 5.570550667 | —1.666997641 | 4.77E—05 | 0.07711271 |
| Grik4 | 9.223661505 | 8.523675197 | —0.699986308 | 5.03E—05 | 0.07711271 |
| Sdhd | 14.37797406 | 13.56563435 | —0.812339706 | 6.16E—05 | 0.07711271 |
| Napg | 10.37368659 | 9.853267401 | —0.520419193 | 6.42E—05 | 0.07711271 |
| Mrrf | 7.127263566 | 6.065031172 | —1.062232394 | 8.17E—05 | 0.07711271 |
| BC091405 | 10.38125201 | 9.282285641 | —1.09896637 | 8.74E—05 | 0.07711271 |
| Tarbp2 | 12.45655726 | 12.07159614 | —0.384961117 | 9.39E—05 | 0.07711271 |
| RGD1309546_predicted | 8.534002377 | 7.502899404 | —1.031102973 | 0.000106301 | 0.07711271 |
| Grin2c | 8.899255961 | 6.97904754 | —1.920208421 | 0.000106996 | 0.07711271 |
| TC566987 | 6.659279818 | 5.827413166 | —0.831866652 | 0.000108607 | 0.07711271 |
| TC552897 | 5.933248175 | 4.801232308 | —1.132015867 | 0.00010879 | 0.07711271 |
| Prkar2a | 6.163801451 | 5.313528282 | —0.850273169 | 0.000111853 | 0.07711271 |
| Glt1d1_predicted | 5.121800999 | 4.103526035 | —1.018274964 | 0.000112311 | 0.07711271 |
| BF555161 | 10.59364955 | 9.470574079 | —1.123075469 | 0.000117617 | 0.07711271 |
| TC538830 | 12.53146816 | 11.24170839 | —1.289759763 | 0.000121745 | 0.07711271 |
| RGD1566054_predicted | 9.115400025 | 8.101685773 | —1.013714251 | 0.000122074 | 0.07711271 |
| Lrp11_predicted | 13.07487226 | 11.70424527 | —1.370626989 | 0.000124681 | 0.07711271 |
| TC536024 | 7.13278452 | 6.240473074 | —0.892311445 | 0.000125993 | 0.07711271 |
| Cited2 | 10.85269214 | 8.990111494 | —1.862580645 | 0.000136342 | 0.07711271 |
| BF397813 | 7.19066408 | 5.792890555 | —1.397773525 | 0.000144061 | 0.07711271 |
| AI112975 | 6.352713186 | 5.377218263 | —0.975494923 | 0.000146482 | 0.07711271 |
| RGD1566367_predicted | 5.6358019 | 5.240674268 | —0.395127632 | 0.00014795 | 0.07711271 |
| Polr3h_predicted | 11.44293632 | 10.23386016 | —1.209076162 | 0.000150598 | 0.07711271 |
| Pygb | 12.45213506 | 11.79157662 | —0.660558447 | 0.000154638 | 0.07711271 |
| AW142634 | 8.922013872 | 7.829003261 | —1.093010611 | 0.000156724 | 0.07711271 |
| BF565628 | 10.29869369 | 9.349174788 | —0.949518899 | 0.000157086 | 0.07711271 |
| Gdap1_predicted | 8.365334903 | 6.792027238 | —1.573307664 | 0.000164033 | 0.07711271 |
| Ryr2 | 8.079272174 | 7.27621553 | —0.803056644 | 0.000164158 | 0.07711271 |
| BF555945 | 7.644955812 | 5.93488388 | —1.710071931 | 0.000166291 | 0.07711271 |
| Chchd1_predicted | 13.92529609 | 13.52993193 | —0.395364161 | 0.000185585 | 0.07711271 |
| CB718612 | 8.141380063 | 7.317726555 | —0.823653508 | 0.00018998 | 0.07711271 |
| BF401583 | 3.807342642 | 3.135350749 | —0.671991893 | 0.000196042 | 0.07711271 |
| DV718172 | 13.52733676 | 12.61872235 | —0.908614414 | 0.000205766 | 0.07711271 |
| AW921183 | 10.34179328 | 9.467173785 | —0.874619492 | 0.000208601 | 0.07711271 |
| Atp6v1a1_predicted | 10.42042831 | 10.06973958 | —0.350688726 | 0.000209702 | 0.07711271 |
| Hexim2_predicted | 9.914767395 | 9.287364476 | —0.627402919 | 0.000237955 | 0.07711271 |
| Pigh_predicted | 6.450865425 | 5.643206561 | —0.807658864 | 0.000246319 | 0.07711271 |
| LOC307783 | 5.032882194 | 3.665875684 | —1.367006509 | 0.000248578 | 0.07711271 |
| LOC690163 | 8.287898848 | 6.848782046 | —1.439116802 | 0.000252011 | 0.07711271 |
| RGD1566086_predicted | 6.787042716 | 6.316220869 | —0.470821846 | 0.000252689 | 0.07711271 |
| TC525615 | 11.81161754 | 10.5813283 | —1.230289236 | 0.000256806 | 0.07711271 |
| Pou3f1 | 10.95885519 | 9.374839483 | —1.584015704 | 0.000261757 | 0.07711271 |
| AW920545 | 8.612227937 | 8.006194471 | —0.606033466 | 0.000263301 | 0.07711271 |
| TC530561 | 6.361469677 | 4.977425946 | —1.38404373 | 0.000266017 | 0.07711271 |
| Vps45 | 11.18560958 | 10.64488764 | —0.540721933 | 0.000266506 | 0.07711271 |
| RGD1565289_predicted | 13.51664684 | 12.46921634 | —1.047430504 | 0.000283049 | 0.07711271 |
| Klhl20_predicted | 8.808515699 | 7.624582956 | —1.183932742 | 0.000283307 | 0.07711271 |
| Pdzk8_predicted | 8.242171572 | 7.347607077 | —0.894564495 | 0.000305242 | 0.07711271 |
| TC560958 | 11.93185862 | 11.11468764 | —0.817170979 | 0.000305894 | 0.07711271 |
| Cops7a_predicted | 13.1106929 | 12.4375094 | —0.673183498 | 0.000306494 | 0.07711271 |
| TC528997 | 9.156193399 | 8.115543858 | —1.040649541 | 0.000308314 | 0.07711271 |
| RGD1310351_predicted | 10.85564614 | 9.902288125 | —0.953358011 | 0.00031047 | 0.07711271 |
| Pdcd8 | 12.75065713 | 12.03492925 | —0.715727881 | 0.00031379 | 0.07711271 |
| Ica1 | 12.17364623 | 11.6622667 | —0.511379533 | 0.000314358 | 0.07711271 |
| LOC680426 | 11.2010015 | 10.36982724 | —0.831174259 | 0.000315713 | 0.07711271 |
| DV719080 | 10.87559452 | 9.495677787 | —1.379916733 | 0.000318635 | 0.07711271 |
| TC545343 | 7.438383629 | 6.879531146 | —0.558852483 | 0.000332478 | 0.07711271 |
| Gsta3 | 12.17020876 | 10.20865792 | —1.961550836 | 0.00033429 | 0.07711271 |
| Mfn2 | 10.55727808 | 10.01586245 | —0.541415627 | 0.000342094 | 0.07711271 |
| AABR03068037 | 7.785306555 | 7.319303528 | —0.466003028 | 0.000351693 | 0.07711271 |
| BE113961 | 10.80779587 | 9.878175532 | —0.92962034 | 0.00035311 | 0.07711271 |
| TC519727 | 11.59791019 | 10.81753792 | —0.780372272 | 0.000357927 | 0.07711271 |
| TC528585 | 7.453045217 | 6.948322568 | —0.504722649 | 0.000359377 | 0.07711271 |
| RGD1311345 | 8.400406852 | 7.683659105 | —0.716747748 | 0.000361038 | 0.07711271 |
| TC543044 | 11.15897338 | 10.80731226 | —0.351661122 | 0.00036687 | 0.07711271 |
| TC538360 | 10.10529859 | 9.492938508 | —0.612360085 | 0.000369532 | 0.07711271 |
| RGD1306053 | 14.18807422 | 12.78633165 | —1.401742574 | 0.00037825 | 0.07711271 |
| Tmem55a | 10.29421099 | 9.628109886 | —0.666101101 | 0.000385931 | 0.07711271 |
| CK478004 | 4.998539607 | 4.108978333 | —0.889561275 | 0.000389178 | 0.07711271 |
| Cog6 | 8.794988406 | 7.924249265 | —0.870739141 | 0.000390394 | 0.07711271 |
| TC544658 | 11.70378121 | 11.34008183 | —0.363699382 | 0.000392004 | 0.07711271 |
| AA957814 | 7.99801766 | 6.667451213 | —1.330566447 | 0.000392693 | 0.07711271 |
| AA851065 | 10.69658123 | 9.076743189 | —1.619838043 | 0.000397605 | 0.07711271 |
| CB545107 | 10.80488687 | 9.566124168 | —1.2387627 | 0.000400668 | 0.07711271 |
| BP503923 | 11.97203025 | 10.95266512 | —1.019365134 | 0.000411009 | 0.07711271 |
| Dnajc8 | 11.88375963 | 11.47580858 | —0.407951048 | 0.000412706 | 0.07711271 |
| Grin2b | 7.819443318 | 6.894573198 | —0.92487012 | 0.000417686 | 0.07711271 |
| Slc16a11_predicted | 10.74873215 | 9.354260934 | —1.394471217 | 0.000419341 | 0.07711271 |
| Birc6_predicted | 7.745470898 | 7.220010389 | —0.525460509 | 0.000419662 | 0.07711271 |
| Mib1_predicted | 8.245212972 | 7.371903929 | —0.873309043 | 0.000423797 | 0.07711271 |
| TC559433 | 11.13137332 | 9.782275241 | —1.349098076 | 0.000423917 | 0.07711271 |
| AW916157 | 11.73649748 | 10.69087852 | —1.04561896 | 0.000426872 | 0.07711271 |
| AW917472 | 11.34281752 | 10.58589712 | —0.756920404 | 0.000435355 | 0.07711271 |
| Tap1 | 9.061885637 | 8.182214145 | —0.879671492 | 0.000440342 | 0.07711271 |
| AW916613 | 2.654368574 | 1.390282852 | —1.264085722 | 0.000444876 | 0.07711271 |
| Mfsd1_predicted | 6.848503926 | 5.756632868 | —1.091871059 | 0.000445474 | 0.07711271 |
| AA818474 | 4.391921753 | 3.594459458 | —0.797462295 | 0.000446082 | 0.07711271 |
| TC563567 | 8.989583387 | 8.005430887 | —0.9841525 | 0.000455838 | 0.07711271 |
| RGD1306356 | 10.99949907 | 10.38002044 | —0.61947863 | 0.000463089 | 0.07711271 |
| DV715341 | 8.050123212 | 7.619079779 | —0.431043434 | 0.000473159 | 0.07711271 |
| BF563211 | 6.051837901 | 5.373536893 | —0.678301008 | 0.000476289 | 0.07711271 |
| Rims1 | 7.088218226 | 6.595183902 | —0.493034323 | 0.000480843 | 0.07711271 |
| AI102821 | 12.8265747 | 11.10486978 | —1.721704924 | 0.000496254 | 0.07711271 |
| Umps | 10.19219914 | 9.598751948 | —0.593447192 | 0.000499689 | 0.07711271 |
| AI175475 | 6.709628141 | 5.644117818 | —1.065510323 | 0.00050039 | 0.07711271 |
| Nek6 | 8.871652763 | 7.678760217 | —1.192892546 | 0.000500809 | 0.07711271 |
| LOC290577 | 8.796783148 | 8.098975545 | —0.697807603 | 0.000512747 | 0.07711271 |
| Epb4.1l1 | 12.87470645 | 11.8197883 | —1.054918153 | 0.000513513 | 0.07711271 |
| AW917204 | 10.32038964 | 8.851718495 | —1.468671143 | 0.000518431 | 0.07711271 |
| Aggf1 | 8.624603215 | 7.155915536 | —1.468687679 | 0.00052289 | 0.07711271 |
| TC524569 | 8.967339631 | 8.112362678 | —0.854976953 | 0.000530873 | 0.07711271 |
| Acsbg1 | 14.91888151 | 14.34065365 | —0.578227868 | 0.000532623 | 0.07711271 |
| TC532756 | 7.481185857 | 6.76026886 | —0.720916997 | 0.000537663 | 0.07711271 |
| AW918535 | 14.8762029 | 14.0293993 | —0.846803594 | 0.000543389 | 0.07711271 |
| TC547881 | 8.611169112 | 7.435283572 | —1.17588554 | 0.000544447 | 0.07711271 |
| TC525657 | 7.989864402 | 6.913160036 | —1.076704366 | 0.000558529 | 0.077922785 |
| Dlst | 14.58436665 | 14.05417512 | —0.530191529 | 0.000568429 | 0.077922785 |
| BE117446 | 4.271387612 | 3.642009885 | —0.629377726 | 0.000571062 | 0.077922785 |
| TC556147 | 11.20330191 | 9.935224997 | —1.268076913 | 0.000571171 | 0.077922785 |
| Rbm18_predicted | 8.265474859 | 7.532437984 | —0.733036875 | 0.000573185 | 0.077922785 |
| Chgb | 16.35659504 | 15.63431894 | —0.722276099 | 0.000576277 | 0.077922785 |
| LOC682205 | 8.396143751 | 7.517812838 | —0.878330913 | 0.000576944 | 0.077922785 |
| Gpr173 | 6.652605716 | 5.860519811 | —0.792085905 | 0.000590354 | 0.077922785 |
| XM_216096 | 7.832298665 | 6.566407732 | —1.265890933 | 0.000599328 | 0.077922785 |
| Ppp6c | 9.764572047 | 9.414556134 | —0.350015913 | 0.000605339 | 0.077922785 |
| XM_343871 | 10.90379578 | 10.24265728 | —0.661138501 | 0.000606072 | 0.077922785 |
| Fgd4 | 8.357984576 | 7.228528075 | —1.129456501 | 0.000610696 | 0.077922785 |
| CX569250 | 9.795475601 | 9.227937407 | —0.567538194 | 0.00061442 | 0.077922785 |
| Hap1 | 12.02268819 | 11.01938568 | —1.003302507 | 0.000616681 | 0.077922785 |
| AW915320 | 9.170075196 | 8.417656657 | —0.752418539 | 0.000618451 | 0.077922785 |
| Rragd_predicted | 10.70444865 | 9.093806459 | —1.610642189 | 0.000619331 | 0.077922785 |
| TC541972 | 10.34640635 | 9.316275627 | —1.030130724 | 0.00063095 | 0.07819106 |
| AI230360 | 7.918189901 | 7.234716989 | —0.683472912 | 0.000642562 | 0.07819106 |
| Igf2r | 13.17561599 | 12.47214529 | —0.703470695 | 0.000648788 | 0.07819106 |
| DV719617 | 10.27750625 | 9.107724317 | —1.169781934 | 0.000651766 | 0.07819106 |
| Mrpl18_predicted | 12.51441646 | 11.58262484 | —0.931791612 | 0.000662315 | 0.07819106 |
| TC568517 | 7.18069051 | 6.439772542 | —0.740917968 | 0.000674076 | 0.07819106 |
| Adsl_predicted | 12.53997034 | 11.84135281 | —0.698617527 | 0.000679503 | 0.07819106 |
| TC519890 | 15.20193502 | 13.84576879 | —1.356166231 | 0.000682539 | 0.07819106 |
| Spg20 | 8.308415518 | 7.58305852 | —0.725356998 | 0.000686525 | 0.07819106 |
| AI170696 | 6.942817153 | 6.027001338 | —0.915815815 | 0.00069311 | 0.07819106 |
| Ube2v2 | 9.661199706 | 8.572804044 | —1.088395662 | 0.000693451 | 0.07819106 |
| LOC498295 | 12.20451881 | 11.83959221 | —0.364926599 | 0.000698494 | 0.078249597 |
| TC560921 | 5.207732953 | 4.297097796 | —0.910635157 | 0.000700069 | 0.078249597 |
| BF555924 | 9.985597821 | 9.469135844 | —0.516461977 | 0.000702983 | 0.078249597 |
| Pfkm | 14.51654843 | 14.05002374 | —0.466524695 | 0.000708505 | 0.078249597 |
| TC564512 | 8.333396639 | 7.32224411 | —1.011152528 | 0.000721932 | 0.07899534 |
| LOC500295 | 9.420651641 | 8.540467639 | —0.880184003 | 0.000724825 | 0.07899534 |
| Sf3b2_predicted | 12.44354911 | 11.6085621 | —0.83498701 | 0.000725793 | 0.07899534 |
| BF523428 | 13.15045896 | 12.09237333 | —1.058085628 | 0.000726436 | 0.07899534 |
| Zfp297b | 8.14767076 | 7.796674244 | —0.350996515 | 0.000734886 | 0.07936277 |
| AA998677 | 6.022499947 | 5.66326418 | —0.359235767 | 0.000738839 | 0.07936277 |
| Commd10 | 13.07110695 | 12.22251811 | —0.848588842 | 0.000741977 | 0.07936277 |
| Usp13_predicted | 8.880457276 | 8.301686706 | —0.57877057 | 0.000751682 | 0.07936277 |
| TC539690 | 11.53252368 | 10.19001348 | —1.342510194 | 0.000754935 | 0.07936277 |
| AW142620 | 10.54231861 | 9.200592376 | —1.341726234 | 0.000763691 | 0.079628835 |
| Keap1 | 12.00883633 | 11.60287219 | —0.405964134 | 0.000792061 | 0.081218196 |
| Gsk3b | 10.9550178 | 10.01148948 | —0.943528324 | 0.000797188 | 0.081294469 |
| RGD1310192_predicted | 10.30348412 | 9.743106299 | —0.560377818 | 0.000800586 | 0.081294469 |
| AW919892 | 9.009219476 | 8.398195424 | —0.611024052 | 0.00080164 | 0.081294469 |
| CX570570 | 9.009092379 | 8.150761251 | —0.858331128 | 0.00081345 | 0.081955526 |
| CO403204 | 7.341185431 | 6.396430715 | —0.944754716 | 0.000815344 | 0.081955526 |
| DV727788 | 9.546149034 | 8.506229032 | —1.039920002 | 0.000820046 | 0.082157822 |
| Crebl2 | 8.237847284 | 7.059695143 | —1.178152141 | 0.000832899 | 0.082830708 |
| RGD1566078_predicted | 15.4991444 | 14.43680942 | —1.062334982 | 0.000843282 | 0.082831536 |
| TC536252 | 6.791496764 | 6.081404474 | —0.71009229 | 0.000848504 | 0.082831536 |
| RGD1310383_predicted | 9.675442727 | 8.875211356 | —0.800231371 | 0.000854032 | 0.082831536 |
| Ndrg2 | 16.92933608 | 16.23958962 | —0.689746461 | 0.000855608 | 0.082831536 |
| AA819653 | 6.401981606 | 5.54072971 | —0.861251897 | 0.000864825 | 0.082831536 |
| Nr1d2 | 4.102851341 | 2.907566815 | —1.195284526 | 0.000870343 | 0.082831536 |
| AI030552 | 6.242106917 | 4.813012178 | —1.429094739 | 0.000872853 | 0.082831536 |
| TC557120 | 11.58985733 | 11.08039255 | —0.509464782 | 0.000878637 | 0.083021035 |
| CB547657 | 7.11769739 | 5.41137132 | —1.706326069 | 0.000885415 | 0.083021035 |
| TC551191 | 7.699104736 | 6.244599038 | —1.454505698 | 0.000887765 | 0.083021035 |
| Aytl2_predicted | 7.999183956 | 7.427312229 | —0.571871727 | 0.000891151 | 0.083021035 |
| Ddef2_predicted | 7.639303041 | 7.13151159 | —0.507791451 | 0.000898719 | 0.083047388 |
| Ratsg2 | 11.68645688 | 11.30312412 | —0.383332762 | 0.000913048 | 0.083047388 |
| ENSRNOT00000043649 | 12.10622909 | 11.2676376 | —0.838591496 | 0.00093425 | 0.083047388 |
| Slc4a4 | 10.52371038 | 9.660948829 | —0.862761553 | 0.000935657 | 0.083047388 |
| Copb2 | 12.96384037 | 12.52074638 | —0.443093992 | 0.000945107 | 0.083047388 |
| Plekhc1 | 9.749091344 | 9.407128148 | —0.341963196 | 0.000946928 | 0.083047388 |
| RGD1561030_predicted | 5.157115548 | 4.180877924 | —0.976237624 | 0.000950336 | 0.083047388 |
| TC525601 | 13.50942052 | 12.9991972 | —0.510223326 | 0.000950464 | 0.083047388 |
| Phf7 | 8.191447181 | 7.356775616 | —0.834671565 | 0.000953909 | 0.083047388 |
| BQ782721 | 4.908138931 | 4.310952068 | —0.597186864 | 0.000963823 | 0.083047388 |
| AA925274 | 5.579121622 | 5.090008894 | —0.489112728 | 0.000969917 | 0.083047388 |
| DV727304 | 11.16319859 | 10.59010722 | —0.573091369 | 0.000975685 | 0.083047388 |